Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18372 | 5' | -53.6 | NC_004681.1 | + | 8804 | 1.11 | 0.001659 |
Target: 5'- cGCCCUGACCAUCACCGAUGAAGGUCUg -3' miRNA: 3'- -CGGGACUGGUAGUGGCUACUUCCAGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 53778 | 0.77 | 0.296067 |
Target: 5'- cGCCUUG-CCAUCGCCGAUGAAcacuuggacuuGGUUg -3' miRNA: 3'- -CGGGACuGGUAGUGGCUACUU-----------CCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 50959 | 0.77 | 0.288827 |
Target: 5'- cGCCCUcGCCAUUGCUGGUGAGGGa-- -3' miRNA: 3'- -CGGGAcUGGUAGUGGCUACUUCCaga -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 50998 | 0.73 | 0.48983 |
Target: 5'- cGCCCgcgccGCCGaCGCCGAUGA-GGUCg -3' miRNA: 3'- -CGGGac---UGGUaGUGGCUACUuCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 47013 | 0.7 | 0.657272 |
Target: 5'- gGCCCUGACCAUCcccACCGAcGAgcccgaccccgacgAGGa-- -3' miRNA: 3'- -CGGGACUGGUAG---UGGCUaCU--------------UCCaga -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 18116 | 0.7 | 0.649667 |
Target: 5'- cGCCCccGGCCAggCACCGGgucAGGUCg -3' miRNA: 3'- -CGGGa-CUGGUa-GUGGCUacuUCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 46971 | 0.7 | 0.660527 |
Target: 5'- aGCCCgaUGACgAU-ACCGA-GAAGGUCUc -3' miRNA: 3'- -CGGG--ACUGgUAgUGGCUaCUUCCAGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 66942 | 0.69 | 0.735234 |
Target: 5'- gGCCCUGguGCCGcgCGCCGAgcucGAAGG-Cg -3' miRNA: 3'- -CGGGAC--UGGUa-GUGGCUa---CUUCCaGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 47718 | 0.69 | 0.728972 |
Target: 5'- uGCCCgcggGGCCGUCgcuggucccguuguuGCCGccguUGAAGGUUUu -3' miRNA: 3'- -CGGGa---CUGGUAG---------------UGGCu---ACUUCCAGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 36362 | 0.69 | 0.724778 |
Target: 5'- gGCCUUGAgCCAgcgCACCGcgGAGGuguGUCg -3' miRNA: 3'- -CGGGACU-GGUa--GUGGCuaCUUC---CAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 16231 | 0.69 | 0.714231 |
Target: 5'- cGCCCUGgugacGCCAUcCGCCugaGUGAucAGGUCg -3' miRNA: 3'- -CGGGAC-----UGGUA-GUGGc--UACU--UCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 67022 | 0.69 | 0.692911 |
Target: 5'- cGCgCaGACCuUCAUCGGUGAuGGUCa -3' miRNA: 3'- -CGgGaCUGGuAGUGGCUACUuCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 14784 | 0.69 | 0.703605 |
Target: 5'- cGCCCUGGCCAUC-CUGA---AGG-CUg -3' miRNA: 3'- -CGGGACUGGUAGuGGCUacuUCCaGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 40975 | 0.68 | 0.765952 |
Target: 5'- gGCCUUGACC-UCGCCGAgcuccuugUGGAcGUCc -3' miRNA: 3'- -CGGGACUGGuAGUGGCU--------ACUUcCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 721 | 0.68 | 0.752772 |
Target: 5'- uGCUCUGcACCAcgguucucuucuggUCugCGGUGAGGG-CUa -3' miRNA: 3'- -CGGGAC-UGGU--------------AGugGCUACUUCCaGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 57727 | 0.68 | 0.765952 |
Target: 5'- -gCCUGGCCGggggCGCCGAUGccGGg-- -3' miRNA: 3'- cgGGACUGGUa---GUGGCUACuuCCaga -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 27498 | 0.66 | 0.888897 |
Target: 5'- aCCCUGACCuggggcaCGCCucaGAUcGAGGUCg -3' miRNA: 3'- cGGGACUGGua-----GUGG---CUAcUUCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 48442 | 0.66 | 0.888897 |
Target: 5'- aCCUuguUGGCCAcguccauuucgaUCACCGGgguuccgccguUGAGGGUCa -3' miRNA: 3'- cGGG---ACUGGU------------AGUGGCU-----------ACUUCCAGa -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 73254 | 0.66 | 0.849712 |
Target: 5'- uUCCa-GCCAUUGCCGGUGAggauggGGGUCUc -3' miRNA: 3'- cGGGacUGGUAGUGGCUACU------UCCAGA- -5' |
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18372 | 5' | -53.6 | NC_004681.1 | + | 9520 | 0.66 | 0.858024 |
Target: 5'- -aCC-GGCCAUCACaag-GAAGGUCg -3' miRNA: 3'- cgGGaCUGGUAGUGgcuaCUUCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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