Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18372 | 5' | -53.6 | NC_004681.1 | + | 53102 | 0.66 | 0.858024 |
|
Target: 5'- aCCCgaguggcGGCCGU-GCCGGUGuucuGGGUCUg -3' miRNA: 3'- cGGGa------CUGGUAgUGGCUACu---UCCAGA- -5' |
|||||||
| 18372 | 5' | -53.6 | NC_004681.1 | + | 9520 | 0.66 | 0.858024 |
|
Target: 5'- -aCC-GGCCAUCACaag-GAAGGUCg -3' miRNA: 3'- cgGGaCUGGUAGUGgcuaCUUCCAGa -5' |
|||||||
| 18372 | 5' | -53.6 | NC_004681.1 | + | 73254 | 0.66 | 0.849712 |
|
Target: 5'- uUCCa-GCCAUUGCCGGUGAggauggGGGUCUc -3' miRNA: 3'- cGGGacUGGUAGUGGCUACU------UCCAGA- -5' |
|||||||
| 18372 | 5' | -53.6 | NC_004681.1 | + | 53707 | 0.66 | 0.849712 |
|
Target: 5'- uGUCCaUGACCGUCGCCGAccuc-GUCg -3' miRNA: 3'- -CGGG-ACUGGUAGUGGCUacuucCAGa -5' |
|||||||
| 18372 | 5' | -53.6 | NC_004681.1 | + | 48442 | 0.66 | 0.888897 |
|
Target: 5'- aCCUuguUGGCCAcguccauuucgaUCACCGGgguuccgccguUGAGGGUCa -3' miRNA: 3'- cGGG---ACUGGU------------AGUGGCU-----------ACUUCCAGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home