miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 50362 0.66 0.724183
Target:  5'- cGGCuguggGACgUGGUCGAgGGCGGCu---- -3'
miRNA:   3'- -CCG-----UUGgGCCAGUUgCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 74303 0.66 0.724183
Target:  5'- aGGCuGGCCCGGUCAcCaGgGGUGAGu- -3'
miRNA:   3'- -CCG-UUGGGCCAGUuGcCgCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 19050 0.66 0.70326
Target:  5'- gGGCGACCCGGUaGACGuacaGGUggGc- -3'
miRNA:   3'- -CCGUUGGGCCAgUUGCcg--CCGuuCuu -5'
18374 3' -56.6 NC_004681.1 + 2139 0.66 0.70326
Target:  5'- uGGUAACCCGG-CAGguUGcGCGGCGugguGAu -3'
miRNA:   3'- -CCGUUGGGCCaGUU--GC-CGCCGUu---CUu -5'
18374 3' -56.6 NC_004681.1 + 62088 0.66 0.692693
Target:  5'- uGGCGGCCUc--CAugGGCGGCAu--- -3'
miRNA:   3'- -CCGUUGGGccaGUugCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 27658 0.66 0.692693
Target:  5'- -cCAACuCCGGUUAccgauACGGCGGCGGcGGu -3'
miRNA:   3'- ccGUUG-GGCCAGU-----UGCCGCCGUU-CUu -5'
18374 3' -56.6 NC_004681.1 + 44687 0.66 0.692693
Target:  5'- cGGCAa--CGG-CGACGGCGGCGu--- -3'
miRNA:   3'- -CCGUuggGCCaGUUGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 34741 0.66 0.692693
Target:  5'- cGGCcgccGCCCcuuGUCGAaguaGGgGGCAAGAAg -3'
miRNA:   3'- -CCGu---UGGGc--CAGUUg---CCgCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 38806 0.66 0.692693
Target:  5'- uGGCGAUggCCGGaaggagugUCAGCGuuGCGGCAAGu- -3'
miRNA:   3'- -CCGUUG--GGCC--------AGUUGC--CGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 25007 0.66 0.682071
Target:  5'- cGGCGAgCUGGgUGGCGGUgGGCGGGGu -3'
miRNA:   3'- -CCGUUgGGCCaGUUGCCG-CCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 25821 0.66 0.682071
Target:  5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3'
miRNA:   3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 32111 0.67 0.671403
Target:  5'- cGGCAuCCaggaagCGGUCAccGCGGCGGCc---- -3'
miRNA:   3'- -CCGUuGG------GCCAGU--UGCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 16531 0.67 0.671403
Target:  5'- uGGCGGCaaCGGUCcccACGGCGGCcguGGu -3'
miRNA:   3'- -CCGUUGg-GCCAGu--UGCCGCCGuu-CUu -5'
18374 3' -56.6 NC_004681.1 + 18316 0.67 0.671403
Target:  5'- aGCAGCcuuCCGGUUcguccgguGGCGGUGGCGGGc- -3'
miRNA:   3'- cCGUUG---GGCCAG--------UUGCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 30255 0.67 0.6607
Target:  5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3'
miRNA:   3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 20307 0.67 0.6607
Target:  5'- --gGGCCUugauGGUUAugGCGGCGGUAAGGAu -3'
miRNA:   3'- ccgUUGGG----CCAGU--UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 65199 0.67 0.649972
Target:  5'- aGGCAGC--GGUCAGUGGCaucaGGCAGGGAg -3'
miRNA:   3'- -CCGUUGggCCAGUUGCCG----CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 36052 0.67 0.649972
Target:  5'- aGGCGA--UGGUCGcGCGGCGgGCGAGGu -3'
miRNA:   3'- -CCGUUggGCCAGU-UGCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 26895 0.67 0.639228
Target:  5'- uGGCuGCCCGGUUcuucuuGCGGCGcuGCuGGAu -3'
miRNA:   3'- -CCGuUGGGCCAGu-----UGCCGC--CGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 62796 0.67 0.639228
Target:  5'- -cCAGCuuGG-CGAUGGCGGCGAuGAc -3'
miRNA:   3'- ccGUUGggCCaGUUGCCGCCGUU-CUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.