Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 25821 | 0.66 | 0.682071 |
Target: 5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3' miRNA: 3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 74303 | 0.66 | 0.724183 |
Target: 5'- aGGCuGGCCCGGUCAcCaGgGGUGAGu- -3' miRNA: 3'- -CCG-UUGGGCCAGUuGcCgCCGUUCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25007 | 0.66 | 0.682071 |
Target: 5'- cGGCGAgCUGGgUGGCGGUgGGCGGGGu -3' miRNA: 3'- -CCGUUgGGCCaGUUGCCG-CCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 2139 | 0.66 | 0.70326 |
Target: 5'- uGGUAACCCGG-CAGguUGcGCGGCGugguGAu -3' miRNA: 3'- -CCGUUGGGCCaGUU--GC-CGCCGUu---CUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 38806 | 0.66 | 0.692693 |
Target: 5'- uGGCGAUggCCGGaaggagugUCAGCGuuGCGGCAAGu- -3' miRNA: 3'- -CCGUUG--GGCC--------AGUUGC--CGCCGUUCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 50362 | 0.66 | 0.724183 |
Target: 5'- cGGCuguggGACgUGGUCGAgGGCGGCu---- -3' miRNA: 3'- -CCG-----UUGgGCCAGUUgCCGCCGuucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 44687 | 0.66 | 0.692693 |
Target: 5'- cGGCAa--CGG-CGACGGCGGCGu--- -3' miRNA: 3'- -CCGUuggGCCaGUUGCCGCCGUucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 27658 | 0.66 | 0.692693 |
Target: 5'- -cCAACuCCGGUUAccgauACGGCGGCGGcGGu -3' miRNA: 3'- ccGUUG-GGCCAGU-----UGCCGCCGUU-CUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 34741 | 0.66 | 0.692693 |
Target: 5'- cGGCcgccGCCCcuuGUCGAaguaGGgGGCAAGAAg -3' miRNA: 3'- -CCGu---UGGGc--CAGUUg---CCgCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 62088 | 0.66 | 0.692693 |
Target: 5'- uGGCGGCCUc--CAugGGCGGCAu--- -3' miRNA: 3'- -CCGUUGGGccaGUugCCGCCGUucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 19050 | 0.66 | 0.70326 |
Target: 5'- gGGCGACCCGGUaGACGuacaGGUggGc- -3' miRNA: 3'- -CCGUUGGGCCAgUUGCcg--CCGuuCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 32111 | 0.67 | 0.671403 |
Target: 5'- cGGCAuCCaggaagCGGUCAccGCGGCGGCc---- -3' miRNA: 3'- -CCGUuGG------GCCAGU--UGCCGCCGuucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 62796 | 0.67 | 0.639228 |
Target: 5'- -cCAGCuuGG-CGAUGGCGGCGAuGAc -3' miRNA: 3'- ccGUUGggCCaGUUGCCGCCGUU-CUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 26895 | 0.67 | 0.639228 |
Target: 5'- uGGCuGCCCGGUUcuucuuGCGGCGcuGCuGGAu -3' miRNA: 3'- -CCGuUGGGCCAGu-----UGCCGC--CGuUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 36052 | 0.67 | 0.649972 |
Target: 5'- aGGCGA--UGGUCGcGCGGCGgGCGAGGu -3' miRNA: 3'- -CCGUUggGCCAGU-UGCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 20307 | 0.67 | 0.6607 |
Target: 5'- --gGGCCUugauGGUUAugGCGGCGGUAAGGAu -3' miRNA: 3'- ccgUUGGG----CCAGU--UGCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 24818 | 0.67 | 0.628478 |
Target: 5'- gGGcCAACgCGGUCGAccucaucggcguCGGCGGCGcGGg -3' miRNA: 3'- -CC-GUUGgGCCAGUU------------GCCGCCGUuCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30255 | 0.67 | 0.6607 |
Target: 5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3' miRNA: 3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 16531 | 0.67 | 0.671403 |
Target: 5'- uGGCGGCaaCGGUCcccACGGCGGCcguGGu -3' miRNA: 3'- -CCGUUGg-GCCAGu--UGCCGCCGuu-CUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 18316 | 0.67 | 0.671403 |
Target: 5'- aGCAGCcuuCCGGUUcguccgguGGCGGUGGCGGGc- -3' miRNA: 3'- cCGUUG---GGCCAG--------UUGCCGCCGUUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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