Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 27620 | 0.7 | 0.481952 |
Target: 5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3' miRNA: 3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 1537 | 0.71 | 0.396849 |
Target: 5'- uGGUGACCgGGcCAGCcuucagcugGGCGGCGGGGGa -3' miRNA: 3'- -CCGUUGGgCCaGUUG---------CCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 17475 | 0.71 | 0.396849 |
Target: 5'- uGGCuucguGCCUGG-CAugGGCGGCcucGGAGa -3' miRNA: 3'- -CCGu----UGGGCCaGUugCCGCCGu--UCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 19615 | 0.71 | 0.405825 |
Target: 5'- uGCGGCgUGGUCGAUGaCGGCGAGGGu -3' miRNA: 3'- cCGUUGgGCCAGUUGCcGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 24992 | 0.71 | 0.433501 |
Target: 5'- uGGCGGCacaGG-CGuCGGCGGCAAGGGu -3' miRNA: 3'- -CCGUUGgg-CCaGUuGCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28126 | 0.71 | 0.442968 |
Target: 5'- cGGCc-CCgCGGgCAACGGCGGCGgcGGAu -3' miRNA: 3'- -CCGuuGG-GCCaGUUGCCGCCGU--UCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30730 | 0.71 | 0.442968 |
Target: 5'- cGGCGucggcCCCGGUCuugAGCGagaccGCGGCGAGGg -3' miRNA: 3'- -CCGUu----GGGCCAG---UUGC-----CGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 69090 | 0.71 | 0.424153 |
Target: 5'- cGGCcgaCUGGUCGAUGGUGGCuAGGg -3' miRNA: 3'- -CCGuugGGCCAGUUGCCGCCGuUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 61173 | 0.72 | 0.362252 |
Target: 5'- gGGCAACUgGGUCGACGGCGaCGc--- -3' miRNA: 3'- -CCGUUGGgCCAGUUGCCGCcGUucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 27764 | 0.72 | 0.345757 |
Target: 5'- cGGCAGCggCGG-CAGCGGCGGCGcuaAGGu -3' miRNA: 3'- -CCGUUGg-GCCaGUUGCCGCCGU---UCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 26925 | 0.73 | 0.306912 |
Target: 5'- cGGCGACUCGG-CAuACGGUGGUAGGc- -3' miRNA: 3'- -CCGUUGGGCCaGU-UGCCGCCGUUCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28042 | 0.73 | 0.322038 |
Target: 5'- cGGCGcuggcGCUggCGGUCGAggcggUGGCGGCAAGAAg -3' miRNA: 3'- -CCGU-----UGG--GCCAGUU-----GCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 14081 | 0.75 | 0.239441 |
Target: 5'- uGGCGGCCgCGGUCuggUGGCGcGCGAGGg -3' miRNA: 3'- -CCGUUGG-GCCAGuu-GCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 17891 | 0.75 | 0.258277 |
Target: 5'- aGGaauuCCUGGgCGGCGGCGGCGAGGGu -3' miRNA: 3'- -CCguu-GGGCCaGUUGCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 45509 | 0.77 | 0.194783 |
Target: 5'- cGGCGACCCcuacuacaaGGgcgaCGACGGCGGCuGGAAg -3' miRNA: 3'- -CCGUUGGG---------CCa---GUUGCCGCCGuUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25199 | 0.77 | 0.189743 |
Target: 5'- uGGCGGCgCUGG-CAACGGCGGCGAc-- -3' miRNA: 3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 75069 | 0.78 | 0.157583 |
Target: 5'- uGCcACCCcGUCAugGGCGGCAGGGc -3' miRNA: 3'- cCGuUGGGcCAGUugCCGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 9316 | 1.08 | 0.001192 |
Target: 5'- cGGCAACCCGGUCAACGGCGGCAAGAAc -3' miRNA: 3'- -CCGUUGGGCCAGUUGCCGCCGUUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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