miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 24818 0.67 0.628478
Target:  5'- gGGcCAACgCGGUCGAccucaucggcguCGGCGGCGcGGg -3'
miRNA:   3'- -CC-GUUGgGCCAGUU------------GCCGCCGUuCUu -5'
18374 3' -56.6 NC_004681.1 + 42555 0.68 0.596281
Target:  5'- cGGCGucgaugacACCCGG-CAGCGGaacuGCGAGGAc -3'
miRNA:   3'- -CCGU--------UGGGCCaGUUGCCgc--CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 30137 0.68 0.584529
Target:  5'- aGGCGGCCUgugGGUCGGgcucaGGCGGCGcggccgcGGAGu -3'
miRNA:   3'- -CCGUUGGG---CCAGUUg----CCGCCGU-------UCUU- -5'
18374 3' -56.6 NC_004681.1 + 52961 0.68 0.574948
Target:  5'- cGUGGCCUGG-CAGgcUGGCGGCAAGu- -3'
miRNA:   3'- cCGUUGGGCCaGUU--GCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 59790 0.68 0.574948
Target:  5'- cGGCgGAUgCGGUgaCAGCGGCGGCGc--- -3'
miRNA:   3'- -CCG-UUGgGCCA--GUUGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 31253 0.68 0.574948
Target:  5'- cGGCGGCCgCGagc-GCGGCGGCGAuGAGg -3'
miRNA:   3'- -CCGUUGG-GCcaguUGCCGCCGUU-CUU- -5'
18374 3' -56.6 NC_004681.1 + 14168 0.68 0.564345
Target:  5'- cGGCGGCCUccgCGGCGGCGGCu---- -3'
miRNA:   3'- -CCGUUGGGccaGUUGCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 67733 0.69 0.558007
Target:  5'- uGGcCAACCUGGUCucgucggacaauguGCGGCGGUAc--- -3'
miRNA:   3'- -CC-GUUGGGCCAGu-------------UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 30427 0.69 0.553794
Target:  5'- cGGCAACCCGuauGUguACGGCGGgGc--- -3'
miRNA:   3'- -CCGUUGGGC---CAguUGCCGCCgUucuu -5'
18374 3' -56.6 NC_004681.1 + 65914 0.69 0.553794
Target:  5'- gGGCGACCgcaaGGUCccucACGGUGGCAc--- -3'
miRNA:   3'- -CCGUUGGg---CCAGu---UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 26857 0.69 0.54959
Target:  5'- aGUGGgCCGGUCcccaccgccaccuAUGGCGGCGAGGAc -3'
miRNA:   3'- cCGUUgGGCCAGu------------UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 24959 0.69 0.543302
Target:  5'- aGGCcGCCUGcuuGUCGGgguacuCGGCGGCGAGGc -3'
miRNA:   3'- -CCGuUGGGC---CAGUU------GCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 28714 0.69 0.543302
Target:  5'- cGCGGCCCucGGcguucucgucgcUCAGCGGCGGCGGc-- -3'
miRNA:   3'- cCGUUGGG--CC------------AGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 51722 0.69 0.532876
Target:  5'- gGGgAACCUGGuggucgUCGGCGGCcgccccggcgcgGGCAAGAGu -3'
miRNA:   3'- -CCgUUGGGCC------AGUUGCCG------------CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 66055 0.69 0.522523
Target:  5'- uGGCuucAGCCCGGUUGGCGuaGGC-GGAGu -3'
miRNA:   3'- -CCG---UUGGGCCAGUUGCcgCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 25238 0.69 0.512249
Target:  5'- cGGCGGCCaUGGcgcccgCGGCGGCGGUuGGGu -3'
miRNA:   3'- -CCGUUGG-GCCa-----GUUGCCGCCGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 18721 0.69 0.511225
Target:  5'- aGCAgaacaucGCCaagGG-CGACGGCGGCGAGGc -3'
miRNA:   3'- cCGU-------UGGg--CCaGUUGCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 63621 0.7 0.491958
Target:  5'- gGGCcACCgGGgauGCGGCGcGCGGGGAa -3'
miRNA:   3'- -CCGuUGGgCCaguUGCCGC-CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 3818 0.7 0.488946
Target:  5'- uGGCGcugaugagauucuuGCCUGGcaaGACGGCGGCAuguGGGAc -3'
miRNA:   3'- -CCGU--------------UGGGCCag-UUGCCGCCGU---UCUU- -5'
18374 3' -56.6 NC_004681.1 + 27620 0.7 0.481952
Target:  5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.