miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 25821 0.66 0.682071
Target:  5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3'
miRNA:   3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 26857 0.69 0.54959
Target:  5'- aGUGGgCCGGUCcccaccgccaccuAUGGCGGCGAGGAc -3'
miRNA:   3'- cCGUUgGGCCAGu------------UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 26895 0.67 0.639228
Target:  5'- uGGCuGCCCGGUUcuucuuGCGGCGcuGCuGGAu -3'
miRNA:   3'- -CCGuUGGGCCAGu-----UGCCGC--CGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 26925 0.73 0.306912
Target:  5'- cGGCGACUCGG-CAuACGGUGGUAGGc- -3'
miRNA:   3'- -CCGUUGGGCCaGU-UGCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 27620 0.7 0.481952
Target:  5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 27658 0.66 0.692693
Target:  5'- -cCAACuCCGGUUAccgauACGGCGGCGGcGGu -3'
miRNA:   3'- ccGUUG-GGCCAGU-----UGCCGCCGUU-CUu -5'
18374 3' -56.6 NC_004681.1 + 27764 0.72 0.345757
Target:  5'- cGGCAGCggCGG-CAGCGGCGGCGcuaAGGu -3'
miRNA:   3'- -CCGUUGg-GCCaGUUGCCGCCGU---UCUu -5'
18374 3' -56.6 NC_004681.1 + 28042 0.73 0.322038
Target:  5'- cGGCGcuggcGCUggCGGUCGAggcggUGGCGGCAAGAAg -3'
miRNA:   3'- -CCGU-----UGG--GCCAGUU-----GCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 28126 0.71 0.442968
Target:  5'- cGGCc-CCgCGGgCAACGGCGGCGgcGGAu -3'
miRNA:   3'- -CCGuuGG-GCCaGUUGCCGCCGU--UCUu -5'
18374 3' -56.6 NC_004681.1 + 28714 0.69 0.543302
Target:  5'- cGCGGCCCucGGcguucucgucgcUCAGCGGCGGCGGc-- -3'
miRNA:   3'- cCGUUGGG--CC------------AGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 30137 0.68 0.584529
Target:  5'- aGGCGGCCUgugGGUCGGgcucaGGCGGCGcggccgcGGAGu -3'
miRNA:   3'- -CCGUUGGG---CCAGUUg----CCGCCGU-------UCUU- -5'
18374 3' -56.6 NC_004681.1 + 30255 0.67 0.6607
Target:  5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3'
miRNA:   3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 30427 0.69 0.553794
Target:  5'- cGGCAACCCGuauGUguACGGCGGgGc--- -3'
miRNA:   3'- -CCGUUGGGC---CAguUGCCGCCgUucuu -5'
18374 3' -56.6 NC_004681.1 + 30730 0.71 0.442968
Target:  5'- cGGCGucggcCCCGGUCuugAGCGagaccGCGGCGAGGg -3'
miRNA:   3'- -CCGUu----GGGCCAG---UUGC-----CGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 31253 0.68 0.574948
Target:  5'- cGGCGGCCgCGagc-GCGGCGGCGAuGAGg -3'
miRNA:   3'- -CCGUUGG-GCcaguUGCCGCCGUU-CUU- -5'
18374 3' -56.6 NC_004681.1 + 32111 0.67 0.671403
Target:  5'- cGGCAuCCaggaagCGGUCAccGCGGCGGCc---- -3'
miRNA:   3'- -CCGUuGG------GCCAGU--UGCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 32207 0.7 0.478969
Target:  5'- cGGCAACCUGGUggagcaggccaucgCAGCGGCaGCGcGGc -3'
miRNA:   3'- -CCGUUGGGCCA--------------GUUGCCGcCGUuCUu -5'
18374 3' -56.6 NC_004681.1 + 34741 0.66 0.692693
Target:  5'- cGGCcgccGCCCcuuGUCGAaguaGGgGGCAAGAAg -3'
miRNA:   3'- -CCGu---UGGGc--CAGUUg---CCgCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 36052 0.67 0.649972
Target:  5'- aGGCGA--UGGUCGcGCGGCGgGCGAGGu -3'
miRNA:   3'- -CCGUUggGCCAGU-UGCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 38806 0.66 0.692693
Target:  5'- uGGCGAUggCCGGaaggagugUCAGCGuuGCGGCAAGu- -3'
miRNA:   3'- -CCGUUG--GGCC--------AGUUGC--CGCCGUUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.