miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 42555 0.68 0.596281
Target:  5'- cGGCGucgaugacACCCGG-CAGCGGaacuGCGAGGAc -3'
miRNA:   3'- -CCGU--------UGGGCCaGUUGCCgc--CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 44687 0.66 0.692693
Target:  5'- cGGCAa--CGG-CGACGGCGGCGu--- -3'
miRNA:   3'- -CCGUuggGCCaGUUGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 45509 0.77 0.194783
Target:  5'- cGGCGACCCcuacuacaaGGgcgaCGACGGCGGCuGGAAg -3'
miRNA:   3'- -CCGUUGGG---------CCa---GUUGCCGCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 50362 0.66 0.724183
Target:  5'- cGGCuguggGACgUGGUCGAgGGCGGCu---- -3'
miRNA:   3'- -CCG-----UUGgGCCAGUUgCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 51722 0.69 0.532876
Target:  5'- gGGgAACCUGGuggucgUCGGCGGCcgccccggcgcgGGCAAGAGu -3'
miRNA:   3'- -CCgUUGGGCC------AGUUGCCG------------CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 52961 0.68 0.574948
Target:  5'- cGUGGCCUGG-CAGgcUGGCGGCAAGu- -3'
miRNA:   3'- cCGUUGGGCCaGUU--GCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 59790 0.68 0.574948
Target:  5'- cGGCgGAUgCGGUgaCAGCGGCGGCGc--- -3'
miRNA:   3'- -CCG-UUGgGCCA--GUUGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 61173 0.72 0.362252
Target:  5'- gGGCAACUgGGUCGACGGCGaCGc--- -3'
miRNA:   3'- -CCGUUGGgCCAGUUGCCGCcGUucuu -5'
18374 3' -56.6 NC_004681.1 + 62088 0.66 0.692693
Target:  5'- uGGCGGCCUc--CAugGGCGGCAu--- -3'
miRNA:   3'- -CCGUUGGGccaGUugCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 62796 0.67 0.639228
Target:  5'- -cCAGCuuGG-CGAUGGCGGCGAuGAc -3'
miRNA:   3'- ccGUUGggCCaGUUGCCGCCGUU-CUu -5'
18374 3' -56.6 NC_004681.1 + 63621 0.7 0.491958
Target:  5'- gGGCcACCgGGgauGCGGCGcGCGGGGAa -3'
miRNA:   3'- -CCGuUGGgCCaguUGCCGC-CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 65199 0.67 0.649972
Target:  5'- aGGCAGC--GGUCAGUGGCaucaGGCAGGGAg -3'
miRNA:   3'- -CCGUUGggCCAGUUGCCG----CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 65914 0.69 0.553794
Target:  5'- gGGCGACCgcaaGGUCccucACGGUGGCAc--- -3'
miRNA:   3'- -CCGUUGGg---CCAGu---UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 66055 0.69 0.522523
Target:  5'- uGGCuucAGCCCGGUUGGCGuaGGC-GGAGu -3'
miRNA:   3'- -CCG---UUGGGCCAGUUGCcgCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 67733 0.69 0.558007
Target:  5'- uGGcCAACCUGGUCucgucggacaauguGCGGCGGUAc--- -3'
miRNA:   3'- -CC-GUUGGGCCAGu-------------UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 69090 0.71 0.424153
Target:  5'- cGGCcgaCUGGUCGAUGGUGGCuAGGg -3'
miRNA:   3'- -CCGuugGGCCAGUUGCCGCCGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 74303 0.66 0.724183
Target:  5'- aGGCuGGCCCGGUCAcCaGgGGUGAGu- -3'
miRNA:   3'- -CCG-UUGGGCCAGUuGcCgCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 75069 0.78 0.157583
Target:  5'- uGCcACCCcGUCAugGGCGGCAGGGc -3'
miRNA:   3'- cCGuUGGGcCAGUugCCGCCGUUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.