Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 34741 | 0.66 | 0.692693 |
Target: 5'- cGGCcgccGCCCcuuGUCGAaguaGGgGGCAAGAAg -3' miRNA: 3'- -CCGu---UGGGc--CAGUUg---CCgCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 32207 | 0.7 | 0.478969 |
Target: 5'- cGGCAACCUGGUggagcaggccaucgCAGCGGCaGCGcGGc -3' miRNA: 3'- -CCGUUGGGCCA--------------GUUGCCGcCGUuCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 32111 | 0.67 | 0.671403 |
Target: 5'- cGGCAuCCaggaagCGGUCAccGCGGCGGCc---- -3' miRNA: 3'- -CCGUuGG------GCCAGU--UGCCGCCGuucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 31253 | 0.68 | 0.574948 |
Target: 5'- cGGCGGCCgCGagc-GCGGCGGCGAuGAGg -3' miRNA: 3'- -CCGUUGG-GCcaguUGCCGCCGUU-CUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30730 | 0.71 | 0.442968 |
Target: 5'- cGGCGucggcCCCGGUCuugAGCGagaccGCGGCGAGGg -3' miRNA: 3'- -CCGUu----GGGCCAG---UUGC-----CGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30427 | 0.69 | 0.553794 |
Target: 5'- cGGCAACCCGuauGUguACGGCGGgGc--- -3' miRNA: 3'- -CCGUUGGGC---CAguUGCCGCCgUucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30255 | 0.67 | 0.6607 |
Target: 5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3' miRNA: 3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30137 | 0.68 | 0.584529 |
Target: 5'- aGGCGGCCUgugGGUCGGgcucaGGCGGCGcggccgcGGAGu -3' miRNA: 3'- -CCGUUGGG---CCAGUUg----CCGCCGU-------UCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28714 | 0.69 | 0.543302 |
Target: 5'- cGCGGCCCucGGcguucucgucgcUCAGCGGCGGCGGc-- -3' miRNA: 3'- cCGUUGGG--CC------------AGUUGCCGCCGUUcuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28126 | 0.71 | 0.442968 |
Target: 5'- cGGCc-CCgCGGgCAACGGCGGCGgcGGAu -3' miRNA: 3'- -CCGuuGG-GCCaGUUGCCGCCGU--UCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28042 | 0.73 | 0.322038 |
Target: 5'- cGGCGcuggcGCUggCGGUCGAggcggUGGCGGCAAGAAg -3' miRNA: 3'- -CCGU-----UGG--GCCAGUU-----GCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 27764 | 0.72 | 0.345757 |
Target: 5'- cGGCAGCggCGG-CAGCGGCGGCGcuaAGGu -3' miRNA: 3'- -CCGUUGg-GCCaGUUGCCGCCGU---UCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 27658 | 0.66 | 0.692693 |
Target: 5'- -cCAACuCCGGUUAccgauACGGCGGCGGcGGu -3' miRNA: 3'- ccGUUG-GGCCAGU-----UGCCGCCGUU-CUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 27620 | 0.7 | 0.481952 |
Target: 5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3' miRNA: 3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 26925 | 0.73 | 0.306912 |
Target: 5'- cGGCGACUCGG-CAuACGGUGGUAGGc- -3' miRNA: 3'- -CCGUUGGGCCaGU-UGCCGCCGUUCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 26895 | 0.67 | 0.639228 |
Target: 5'- uGGCuGCCCGGUUcuucuuGCGGCGcuGCuGGAu -3' miRNA: 3'- -CCGuUGGGCCAGu-----UGCCGC--CGuUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 26857 | 0.69 | 0.54959 |
Target: 5'- aGUGGgCCGGUCcccaccgccaccuAUGGCGGCGAGGAc -3' miRNA: 3'- cCGUUgGGCCAGu------------UGCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25821 | 0.66 | 0.682071 |
Target: 5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3' miRNA: 3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25238 | 0.69 | 0.512249 |
Target: 5'- cGGCGGCCaUGGcgcccgCGGCGGCGGUuGGGu -3' miRNA: 3'- -CCGUUGG-GCCa-----GUUGCCGCCGuUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25199 | 0.77 | 0.189743 |
Target: 5'- uGGCGGCgCUGG-CAACGGCGGCGAc-- -3' miRNA: 3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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