miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 25007 0.66 0.682071
Target:  5'- cGGCGAgCUGGgUGGCGGUgGGCGGGGu -3'
miRNA:   3'- -CCGUUgGGCCaGUUGCCG-CCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 24992 0.71 0.433501
Target:  5'- uGGCGGCacaGG-CGuCGGCGGCAAGGGu -3'
miRNA:   3'- -CCGUUGgg-CCaGUuGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 24959 0.69 0.543302
Target:  5'- aGGCcGCCUGcuuGUCGGgguacuCGGCGGCGAGGc -3'
miRNA:   3'- -CCGuUGGGC---CAGUU------GCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 24818 0.67 0.628478
Target:  5'- gGGcCAACgCGGUCGAccucaucggcguCGGCGGCGcGGg -3'
miRNA:   3'- -CC-GUUGgGCCAGUU------------GCCGCCGUuCUu -5'
18374 3' -56.6 NC_004681.1 + 20307 0.67 0.6607
Target:  5'- --gGGCCUugauGGUUAugGCGGCGGUAAGGAu -3'
miRNA:   3'- ccgUUGGG----CCAGU--UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 19615 0.71 0.405825
Target:  5'- uGCGGCgUGGUCGAUGaCGGCGAGGGu -3'
miRNA:   3'- cCGUUGgGCCAGUUGCcGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 19050 0.66 0.70326
Target:  5'- gGGCGACCCGGUaGACGuacaGGUggGc- -3'
miRNA:   3'- -CCGUUGGGCCAgUUGCcg--CCGuuCuu -5'
18374 3' -56.6 NC_004681.1 + 18721 0.69 0.511225
Target:  5'- aGCAgaacaucGCCaagGG-CGACGGCGGCGAGGc -3'
miRNA:   3'- cCGU-------UGGg--CCaGUUGCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 18316 0.67 0.671403
Target:  5'- aGCAGCcuuCCGGUUcguccgguGGCGGUGGCGGGc- -3'
miRNA:   3'- cCGUUG---GGCCAG--------UUGCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 17891 0.75 0.258277
Target:  5'- aGGaauuCCUGGgCGGCGGCGGCGAGGGu -3'
miRNA:   3'- -CCguu-GGGCCaGUUGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 17475 0.71 0.396849
Target:  5'- uGGCuucguGCCUGG-CAugGGCGGCcucGGAGa -3'
miRNA:   3'- -CCGu----UGGGCCaGUugCCGCCGu--UCUU- -5'
18374 3' -56.6 NC_004681.1 + 16531 0.67 0.671403
Target:  5'- uGGCGGCaaCGGUCcccACGGCGGCcguGGu -3'
miRNA:   3'- -CCGUUGg-GCCAGu--UGCCGCCGuu-CUu -5'
18374 3' -56.6 NC_004681.1 + 14168 0.68 0.564345
Target:  5'- cGGCGGCCUccgCGGCGGCGGCu---- -3'
miRNA:   3'- -CCGUUGGGccaGUUGCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 14081 0.75 0.239441
Target:  5'- uGGCGGCCgCGGUCuggUGGCGcGCGAGGg -3'
miRNA:   3'- -CCGUUGG-GCCAGuu-GCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 9316 1.08 0.001192
Target:  5'- cGGCAACCCGGUCAACGGCGGCAAGAAc -3'
miRNA:   3'- -CCGUUGGGCCAGUUGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 3818 0.7 0.488946
Target:  5'- uGGCGcugaugagauucuuGCCUGGcaaGACGGCGGCAuguGGGAc -3'
miRNA:   3'- -CCGU--------------UGGGCCag-UUGCCGCCGU---UCUU- -5'
18374 3' -56.6 NC_004681.1 + 2139 0.66 0.70326
Target:  5'- uGGUAACCCGG-CAGguUGcGCGGCGugguGAu -3'
miRNA:   3'- -CCGUUGGGCCaGUU--GC-CGCCGUu---CUu -5'
18374 3' -56.6 NC_004681.1 + 1537 0.71 0.396849
Target:  5'- uGGUGACCgGGcCAGCcuucagcugGGCGGCGGGGGa -3'
miRNA:   3'- -CCGUUGGgCCaGUUG---------CCGCCGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.