miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 65914 0.69 0.553794
Target:  5'- gGGCGACCgcaaGGUCccucACGGUGGCAc--- -3'
miRNA:   3'- -CCGUUGGg---CCAGu---UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 28126 0.71 0.442968
Target:  5'- cGGCc-CCgCGGgCAACGGCGGCGgcGGAu -3'
miRNA:   3'- -CCGuuGG-GCCaGUUGCCGCCGU--UCUu -5'
18374 3' -56.6 NC_004681.1 + 32207 0.7 0.478969
Target:  5'- cGGCAACCUGGUggagcaggccaucgCAGCGGCaGCGcGGc -3'
miRNA:   3'- -CCGUUGGGCCA--------------GUUGCCGcCGUuCUu -5'
18374 3' -56.6 NC_004681.1 + 27620 0.7 0.481952
Target:  5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 3818 0.7 0.488946
Target:  5'- uGGCGcugaugagauucuuGCCUGGcaaGACGGCGGCAuguGGGAc -3'
miRNA:   3'- -CCGU--------------UGGGCCag-UUGCCGCCGU---UCUU- -5'
18374 3' -56.6 NC_004681.1 + 18721 0.69 0.511225
Target:  5'- aGCAgaacaucGCCaagGG-CGACGGCGGCGAGGc -3'
miRNA:   3'- cCGU-------UGGg--CCaGUUGCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 25238 0.69 0.512249
Target:  5'- cGGCGGCCaUGGcgcccgCGGCGGCGGUuGGGu -3'
miRNA:   3'- -CCGUUGG-GCCa-----GUUGCCGCCGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 51722 0.69 0.532876
Target:  5'- gGGgAACCUGGuggucgUCGGCGGCcgccccggcgcgGGCAAGAGu -3'
miRNA:   3'- -CCgUUGGGCC------AGUUGCCG------------CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 26857 0.69 0.54959
Target:  5'- aGUGGgCCGGUCcccaccgccaccuAUGGCGGCGAGGAc -3'
miRNA:   3'- cCGUUgGGCCAGu------------UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 24992 0.71 0.433501
Target:  5'- uGGCGGCacaGG-CGuCGGCGGCAAGGGu -3'
miRNA:   3'- -CCGUUGgg-CCaGUuGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 19615 0.71 0.405825
Target:  5'- uGCGGCgUGGUCGAUGaCGGCGAGGGu -3'
miRNA:   3'- cCGUUGgGCCAGUUGCcGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 17475 0.71 0.396849
Target:  5'- uGGCuucguGCCUGG-CAugGGCGGCcucGGAGa -3'
miRNA:   3'- -CCGu----UGGGCCaGUugCCGCCGu--UCUU- -5'
18374 3' -56.6 NC_004681.1 + 25199 0.77 0.189743
Target:  5'- uGGCGGCgCUGG-CAACGGCGGCGAc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 45509 0.77 0.194783
Target:  5'- cGGCGACCCcuacuacaaGGgcgaCGACGGCGGCuGGAAg -3'
miRNA:   3'- -CCGUUGGG---------CCa---GUUGCCGCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 17891 0.75 0.258277
Target:  5'- aGGaauuCCUGGgCGGCGGCGGCGAGGGu -3'
miRNA:   3'- -CCguu-GGGCCaGUUGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 26925 0.73 0.306912
Target:  5'- cGGCGACUCGG-CAuACGGUGGUAGGc- -3'
miRNA:   3'- -CCGUUGGGCCaGU-UGCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 28042 0.73 0.322038
Target:  5'- cGGCGcuggcGCUggCGGUCGAggcggUGGCGGCAAGAAg -3'
miRNA:   3'- -CCGU-----UGG--GCCAGUU-----GCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 27764 0.72 0.345757
Target:  5'- cGGCAGCggCGG-CAGCGGCGGCGcuaAGGu -3'
miRNA:   3'- -CCGUUGg-GCCaGUUGCCGCCGU---UCUu -5'
18374 3' -56.6 NC_004681.1 + 61173 0.72 0.362252
Target:  5'- gGGCAACUgGGUCGACGGCGaCGc--- -3'
miRNA:   3'- -CCGUUGGgCCAGUUGCCGCcGUucuu -5'
18374 3' -56.6 NC_004681.1 + 1537 0.71 0.396849
Target:  5'- uGGUGACCgGGcCAGCcuucagcugGGCGGCGGGGGa -3'
miRNA:   3'- -CCGUUGGgCCaGUUG---------CCGCCGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.