Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 20307 | 0.67 | 0.6607 |
Target: 5'- --gGGCCUugauGGUUAugGCGGCGGUAAGGAu -3' miRNA: 3'- ccgUUGGG----CCAGU--UGCCGCCGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25821 | 0.66 | 0.682071 |
Target: 5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3' miRNA: 3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 25007 | 0.66 | 0.682071 |
Target: 5'- cGGCGAgCUGGgUGGCGGUgGGCGGGGu -3' miRNA: 3'- -CCGUUgGGCCaGUUGCCG-CCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 38806 | 0.66 | 0.692693 |
Target: 5'- uGGCGAUggCCGGaaggagugUCAGCGuuGCGGCAAGu- -3' miRNA: 3'- -CCGUUG--GGCC--------AGUUGC--CGCCGUUCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 19050 | 0.66 | 0.70326 |
Target: 5'- gGGCGACCCGGUaGACGuacaGGUggGc- -3' miRNA: 3'- -CCGUUGGGCCAgUUGCcg--CCGuuCuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 42555 | 0.68 | 0.596281 |
Target: 5'- cGGCGucgaugacACCCGG-CAGCGGaacuGCGAGGAc -3' miRNA: 3'- -CCGU--------UGGGCCaGUUGCCgc--CGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 59790 | 0.68 | 0.574948 |
Target: 5'- cGGCgGAUgCGGUgaCAGCGGCGGCGc--- -3' miRNA: 3'- -CCG-UUGgGCCA--GUUGCCGCCGUucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 31253 | 0.68 | 0.574948 |
Target: 5'- cGGCGGCCgCGagc-GCGGCGGCGAuGAGg -3' miRNA: 3'- -CCGUUGG-GCcaguUGCCGCCGUU-CUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 75069 | 0.78 | 0.157583 |
Target: 5'- uGCcACCCcGUCAugGGCGGCAGGGc -3' miRNA: 3'- cCGuUGGGcCAGUugCCGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 14081 | 0.75 | 0.239441 |
Target: 5'- uGGCGGCCgCGGUCuggUGGCGcGCGAGGg -3' miRNA: 3'- -CCGUUGG-GCCAGuu-GCCGC-CGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 69090 | 0.71 | 0.424153 |
Target: 5'- cGGCcgaCUGGUCGAUGGUGGCuAGGg -3' miRNA: 3'- -CCGuugGGCCAGUUGCCGCCGuUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 30730 | 0.71 | 0.442968 |
Target: 5'- cGGCGucggcCCCGGUCuugAGCGagaccGCGGCGAGGg -3' miRNA: 3'- -CCGUu----GGGCCAG---UUGC-----CGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 63621 | 0.7 | 0.491958 |
Target: 5'- gGGCcACCgGGgauGCGGCGcGCGGGGAa -3' miRNA: 3'- -CCGuUGGgCCaguUGCCGC-CGUUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 66055 | 0.69 | 0.522523 |
Target: 5'- uGGCuucAGCCCGGUUGGCGuaGGC-GGAGu -3' miRNA: 3'- -CCG---UUGGGCCAGUUGCcgCCGuUCUU- -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 28714 | 0.69 | 0.543302 |
Target: 5'- cGCGGCCCucGGcguucucgucgcUCAGCGGCGGCGGc-- -3' miRNA: 3'- cCGUUGGG--CC------------AGUUGCCGCCGUUcuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 24959 | 0.69 | 0.543302 |
Target: 5'- aGGCcGCCUGcuuGUCGGgguacuCGGCGGCGAGGc -3' miRNA: 3'- -CCGuUGGGC---CAGUU------GCCGCCGUUCUu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 14168 | 0.68 | 0.564345 |
Target: 5'- cGGCGGCCUccgCGGCGGCGGCu---- -3' miRNA: 3'- -CCGUUGGGccaGUUGCCGCCGuucuu -5' |
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18374 | 3' | -56.6 | NC_004681.1 | + | 74303 | 0.66 | 0.724183 |
Target: 5'- aGGCuGGCCCGGUCAcCaGgGGUGAGu- -3' miRNA: 3'- -CCG-UUGGGCCAGUuGcCgCCGUUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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