miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 75069 0.78 0.157583
Target:  5'- uGCcACCCcGUCAugGGCGGCAGGGc -3'
miRNA:   3'- cCGuUGGGcCAGUugCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 25821 0.66 0.682071
Target:  5'- uGUAGCgCGGcCAGaCGGCGcGCGGGAu -3'
miRNA:   3'- cCGUUGgGCCaGUU-GCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 38806 0.66 0.692693
Target:  5'- uGGCGAUggCCGGaaggagugUCAGCGuuGCGGCAAGu- -3'
miRNA:   3'- -CCGUUG--GGCC--------AGUUGC--CGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 74303 0.66 0.724183
Target:  5'- aGGCuGGCCCGGUCAcCaGgGGUGAGu- -3'
miRNA:   3'- -CCG-UUGGGCCAGUuGcCgCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 63621 0.7 0.491958
Target:  5'- gGGCcACCgGGgauGCGGCGcGCGGGGAa -3'
miRNA:   3'- -CCGuUGGgCCaguUGCCGC-CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 66055 0.69 0.522523
Target:  5'- uGGCuucAGCCCGGUUGGCGuaGGC-GGAGu -3'
miRNA:   3'- -CCG---UUGGGCCAGUUGCcgCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 24959 0.69 0.543302
Target:  5'- aGGCcGCCUGcuuGUCGGgguacuCGGCGGCGAGGc -3'
miRNA:   3'- -CCGuUGGGC---CAGUU------GCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 14168 0.68 0.564345
Target:  5'- cGGCGGCCUccgCGGCGGCGGCu---- -3'
miRNA:   3'- -CCGUUGGGccaGUUGCCGCCGuucuu -5'
18374 3' -56.6 NC_004681.1 + 42555 0.68 0.596281
Target:  5'- cGGCGucgaugacACCCGG-CAGCGGaacuGCGAGGAc -3'
miRNA:   3'- -CCGU--------UGGGCCaGUUGCCgc--CGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 20307 0.67 0.6607
Target:  5'- --gGGCCUugauGGUUAugGCGGCGGUAAGGAu -3'
miRNA:   3'- ccgUUGGG----CCAGU--UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 62796 0.67 0.639228
Target:  5'- -cCAGCuuGG-CGAUGGCGGCGAuGAc -3'
miRNA:   3'- ccGUUGggCCaGUUGCCGCCGUU-CUu -5'
18374 3' -56.6 NC_004681.1 + 59790 0.68 0.574948
Target:  5'- cGGCgGAUgCGGUgaCAGCGGCGGCGc--- -3'
miRNA:   3'- -CCG-UUGgGCCA--GUUGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 14081 0.75 0.239441
Target:  5'- uGGCGGCCgCGGUCuggUGGCGcGCGAGGg -3'
miRNA:   3'- -CCGUUGG-GCCAGuu-GCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 65199 0.67 0.649972
Target:  5'- aGGCAGC--GGUCAGUGGCaucaGGCAGGGAg -3'
miRNA:   3'- -CCGUUGggCCAGUUGCCG----CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 69090 0.71 0.424153
Target:  5'- cGGCcgaCUGGUCGAUGGUGGCuAGGg -3'
miRNA:   3'- -CCGuugGGCCAGUUGCCGCCGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 31253 0.68 0.574948
Target:  5'- cGGCGGCCgCGagc-GCGGCGGCGAuGAGg -3'
miRNA:   3'- -CCGUUGG-GCcaguUGCCGCCGUU-CUU- -5'
18374 3' -56.6 NC_004681.1 + 36052 0.67 0.649972
Target:  5'- aGGCGA--UGGUCGcGCGGCGgGCGAGGu -3'
miRNA:   3'- -CCGUUggGCCAGU-UGCCGC-CGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 25007 0.66 0.682071
Target:  5'- cGGCGAgCUGGgUGGCGGUgGGCGGGGu -3'
miRNA:   3'- -CCGUUgGGCCaGUUGCCG-CCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 30730 0.71 0.442968
Target:  5'- cGGCGucggcCCCGGUCuugAGCGagaccGCGGCGAGGg -3'
miRNA:   3'- -CCGUu----GGGCCAG---UUGC-----CGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 28714 0.69 0.543302
Target:  5'- cGCGGCCCucGGcguucucgucgcUCAGCGGCGGCGGc-- -3'
miRNA:   3'- cCGUUGGG--CC------------AGUUGCCGCCGUUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.