Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 19050 | 0.66 | 0.70326 |
Target: 5'- gGGCGACCCGGUaGACGuacaGGUggGc- -3' miRNA: 3'- -CCGUUGGGCCAgUUGCcg--CCGuuCuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 63621 | 0.7 | 0.491958 |
Target: 5'- gGGCcACCgGGgauGCGGCGcGCGGGGAa -3' miRNA: 3'- -CCGuUGGgCCaguUGCCGC-CGUUCUU- -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 16531 | 0.67 | 0.671403 |
Target: 5'- uGGCGGCaaCGGUCcccACGGCGGCcguGGu -3' miRNA: 3'- -CCGUUGg-GCCAGu--UGCCGCCGuu-CUu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 32111 | 0.67 | 0.671403 |
Target: 5'- cGGCAuCCaggaagCGGUCAccGCGGCGGCc---- -3' miRNA: 3'- -CCGUuGG------GCCAGU--UGCCGCCGuucuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 28042 | 0.73 | 0.322038 |
Target: 5'- cGGCGcuggcGCUggCGGUCGAggcggUGGCGGCAAGAAg -3' miRNA: 3'- -CCGU-----UGG--GCCAGUU-----GCCGCCGUUCUU- -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 62088 | 0.66 | 0.692693 |
Target: 5'- uGGCGGCCUc--CAugGGCGGCAu--- -3' miRNA: 3'- -CCGUUGGGccaGUugCCGCCGUucuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 18316 | 0.67 | 0.671403 |
Target: 5'- aGCAGCcuuCCGGUUcguccgguGGCGGUGGCGGGc- -3' miRNA: 3'- cCGUUG---GGCCAG--------UUGCCGCCGUUCuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 30255 | 0.67 | 0.6607 |
Target: 5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3' miRNA: 3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 27764 | 0.72 | 0.345757 |
Target: 5'- cGGCAGCggCGG-CAGCGGCGGCGcuaAGGu -3' miRNA: 3'- -CCGUUGg-GCCaGUUGCCGCCGU---UCUu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 19615 | 0.71 | 0.405825 |
Target: 5'- uGCGGCgUGGUCGAUGaCGGCGAGGGu -3' miRNA: 3'- cCGUUGgGCCAGUUGCcGCCGUUCUU- -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 24992 | 0.71 | 0.433501 |
Target: 5'- uGGCGGCacaGG-CGuCGGCGGCAAGGGu -3' miRNA: 3'- -CCGUUGgg-CCaGUuGCCGCCGUUCUU- -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 28126 | 0.71 | 0.442968 |
Target: 5'- cGGCc-CCgCGGgCAACGGCGGCGgcGGAu -3' miRNA: 3'- -CCGuuGG-GCCaGUUGCCGCCGU--UCUu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 32207 | 0.7 | 0.478969 |
Target: 5'- cGGCAACCUGGUggagcaggccaucgCAGCGGCaGCGcGGc -3' miRNA: 3'- -CCGUUGGGCCA--------------GUUGCCGcCGUuCUu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 27620 | 0.7 | 0.481952 |
Target: 5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3' miRNA: 3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 65914 | 0.69 | 0.553794 |
Target: 5'- gGGCGACCgcaaGGUCccucACGGUGGCAc--- -3' miRNA: 3'- -CCGUUGGg---CCAGu---UGCCGCCGUucuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 30427 | 0.69 | 0.553794 |
Target: 5'- cGGCAACCCGuauGUguACGGCGGgGc--- -3' miRNA: 3'- -CCGUUGGGC---CAguUGCCGCCgUucuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 67733 | 0.69 | 0.558007 |
Target: 5'- uGGcCAACCUGGUCucgucggacaauguGCGGCGGUAc--- -3' miRNA: 3'- -CC-GUUGGGCCAGu-------------UGCCGCCGUucuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 52961 | 0.68 | 0.574948 |
Target: 5'- cGUGGCCUGG-CAGgcUGGCGGCAAGu- -3' miRNA: 3'- cCGUUGGGCCaGUU--GCCGCCGUUCuu -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 30137 | 0.68 | 0.584529 |
Target: 5'- aGGCGGCCUgugGGUCGGgcucaGGCGGCGcggccgcGGAGu -3' miRNA: 3'- -CCGUUGGG---CCAGUUg----CCGCCGU-------UCUU- -5' |
|||||||
18374 | 3' | -56.6 | NC_004681.1 | + | 24818 | 0.67 | 0.628478 |
Target: 5'- gGGcCAACgCGGUCGAccucaucggcguCGGCGGCGcGGg -3' miRNA: 3'- -CC-GUUGgGCCAGUU------------GCCGCCGUuCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home