miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18374 3' -56.6 NC_004681.1 + 17891 0.75 0.258277
Target:  5'- aGGaauuCCUGGgCGGCGGCGGCGAGGGu -3'
miRNA:   3'- -CCguu-GGGCCaGUUGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 45509 0.77 0.194783
Target:  5'- cGGCGACCCcuacuacaaGGgcgaCGACGGCGGCuGGAAg -3'
miRNA:   3'- -CCGUUGGG---------CCa---GUUGCCGCCGuUCUU- -5'
18374 3' -56.6 NC_004681.1 + 25199 0.77 0.189743
Target:  5'- uGGCGGCgCUGG-CAACGGCGGCGAc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 27620 0.7 0.481952
Target:  5'- cGGUGGCgCUGG-CGGCGGCGGCGGc-- -3'
miRNA:   3'- -CCGUUG-GGCCaGUUGCCGCCGUUcuu -5'
18374 3' -56.6 NC_004681.1 + 3818 0.7 0.488946
Target:  5'- uGGCGcugaugagauucuuGCCUGGcaaGACGGCGGCAuguGGGAc -3'
miRNA:   3'- -CCGU--------------UGGGCCag-UUGCCGCCGU---UCUU- -5'
18374 3' -56.6 NC_004681.1 + 16531 0.67 0.671403
Target:  5'- uGGCGGCaaCGGUCcccACGGCGGCcguGGu -3'
miRNA:   3'- -CCGUUGg-GCCAGu--UGCCGCCGuu-CUu -5'
18374 3' -56.6 NC_004681.1 + 18316 0.67 0.671403
Target:  5'- aGCAGCcuuCCGGUUcguccgguGGCGGUGGCGGGc- -3'
miRNA:   3'- cCGUUG---GGCCAG--------UUGCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 30255 0.67 0.6607
Target:  5'- cGGCGGCggCCGGU--ACGGCGuCGAGAc -3'
miRNA:   3'- -CCGUUG--GGCCAguUGCCGCcGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 24818 0.67 0.628478
Target:  5'- gGGcCAACgCGGUCGAccucaucggcguCGGCGGCGcGGg -3'
miRNA:   3'- -CC-GUUGgGCCAGUU------------GCCGCCGUuCUu -5'
18374 3' -56.6 NC_004681.1 + 30137 0.68 0.584529
Target:  5'- aGGCGGCCUgugGGUCGGgcucaGGCGGCGcggccgcGGAGu -3'
miRNA:   3'- -CCGUUGGG---CCAGUUg----CCGCCGU-------UCUU- -5'
18374 3' -56.6 NC_004681.1 + 52961 0.68 0.574948
Target:  5'- cGUGGCCUGG-CAGgcUGGCGGCAAGu- -3'
miRNA:   3'- cCGUUGGGCCaGUU--GCCGCCGUUCuu -5'
18374 3' -56.6 NC_004681.1 + 30427 0.69 0.553794
Target:  5'- cGGCAACCCGuauGUguACGGCGGgGc--- -3'
miRNA:   3'- -CCGUUGGGC---CAguUGCCGCCgUucuu -5'
18374 3' -56.6 NC_004681.1 + 65914 0.69 0.553794
Target:  5'- gGGCGACCgcaaGGUCccucACGGUGGCAc--- -3'
miRNA:   3'- -CCGUUGGg---CCAGu---UGCCGCCGUucuu -5'
18374 3' -56.6 NC_004681.1 + 26857 0.69 0.54959
Target:  5'- aGUGGgCCGGUCcccaccgccaccuAUGGCGGCGAGGAc -3'
miRNA:   3'- cCGUUgGGCCAGu------------UGCCGCCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 51722 0.69 0.532876
Target:  5'- gGGgAACCUGGuggucgUCGGCGGCcgccccggcgcgGGCAAGAGu -3'
miRNA:   3'- -CCgUUGGGCC------AGUUGCCG------------CCGUUCUU- -5'
18374 3' -56.6 NC_004681.1 + 25238 0.69 0.512249
Target:  5'- cGGCGGCCaUGGcgcccgCGGCGGCGGUuGGGu -3'
miRNA:   3'- -CCGUUGG-GCCa-----GUUGCCGCCGuUCUu -5'
18374 3' -56.6 NC_004681.1 + 18721 0.69 0.511225
Target:  5'- aGCAgaacaucGCCaagGG-CGACGGCGGCGAGGc -3'
miRNA:   3'- cCGU-------UGGg--CCaGUUGCCGCCGUUCUu -5'
18374 3' -56.6 NC_004681.1 + 9316 1.08 0.001192
Target:  5'- cGGCAACCCGGUCAACGGCGGCAAGAAc -3'
miRNA:   3'- -CCGUUGGGCCAGUUGCCGCCGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.