miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18375 3' -56.8 NC_004681.1 + 69817 0.66 0.736637
Target:  5'- -cCGUGCCcucugUCGGUUGUCCuG-UCGCu -3'
miRNA:   3'- aaGCGCGGa----AGCCAGUAGGuCuGGCG- -5'
18375 3' -56.8 NC_004681.1 + 9172 0.66 0.736637
Target:  5'- cUUCGaCGCCUUCguGGaCAUCCAG-CUGa -3'
miRNA:   3'- -AAGC-GCGGAAG--CCaGUAGGUCuGGCg -5'
18375 3' -56.8 NC_004681.1 + 19318 0.66 0.705585
Target:  5'- gUCaGCGCCUUCGGUaugaCCuacgaggacgAGACCGa -3'
miRNA:   3'- aAG-CGCGGAAGCCAgua-GG----------UCUGGCg -5'
18375 3' -56.8 NC_004681.1 + 15912 0.66 0.695084
Target:  5'- aUCGCcgugGCCg-CGGUCAagaccaUCCAGGCCa- -3'
miRNA:   3'- aAGCG----CGGaaGCCAGU------AGGUCUGGcg -5'
18375 3' -56.8 NC_004681.1 + 68784 0.66 0.684526
Target:  5'- aUgGCGCCg-CGGUCGUUCAuGAaCGCg -3'
miRNA:   3'- aAgCGCGGaaGCCAGUAGGU-CUgGCG- -5'
18375 3' -56.8 NC_004681.1 + 34699 0.66 0.684526
Target:  5'- cUUCgGCGCCUUCGGUgCGggcUUgGGAauucCCGCg -3'
miRNA:   3'- -AAG-CGCGGAAGCCA-GU---AGgUCU----GGCG- -5'
18375 3' -56.8 NC_004681.1 + 19256 0.66 0.684526
Target:  5'- --aGCGCCa--GGUCuucacCUGGACCGCg -3'
miRNA:   3'- aagCGCGGaagCCAGua---GGUCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 47161 0.67 0.673921
Target:  5'- gUCaGCGCCcgCGGgugCGUUgAGACCGa -3'
miRNA:   3'- aAG-CGCGGaaGCCa--GUAGgUCUGGCg -5'
18375 3' -56.8 NC_004681.1 + 43881 0.67 0.663279
Target:  5'- cUCGcCGCCcugcUCGGUCGccUCUAuGGCUGCu -3'
miRNA:   3'- aAGC-GCGGa---AGCCAGU--AGGU-CUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 23468 0.67 0.631225
Target:  5'- --gGCGCCgccaaGGUCAUCgCAGACgGg -3'
miRNA:   3'- aagCGCGGaag--CCAGUAG-GUCUGgCg -5'
18375 3' -56.8 NC_004681.1 + 65264 0.67 0.620529
Target:  5'- aUCGCcuGCCUUgUGGUCGUCCGcGACaGUg -3'
miRNA:   3'- aAGCG--CGGAA-GCCAGUAGGU-CUGgCG- -5'
18375 3' -56.8 NC_004681.1 + 75136 0.68 0.609843
Target:  5'- aUUGCGCUga-GGU--UCCuAGACCGCg -3'
miRNA:   3'- aAGCGCGGaagCCAguAGG-UCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 10735 0.68 0.567364
Target:  5'- --gGCGCCUUCcaUCAUugCCAGGCCGa -3'
miRNA:   3'- aagCGCGGAAGccAGUA--GGUCUGGCg -5'
18375 3' -56.8 NC_004681.1 + 60198 0.68 0.567364
Target:  5'- cUCGCGCg--CGGUCuUCCAGAgcuccaucgucuUCGCg -3'
miRNA:   3'- aAGCGCGgaaGCCAGuAGGUCU------------GGCG- -5'
18375 3' -56.8 NC_004681.1 + 20019 0.69 0.535998
Target:  5'- --aGCGCCUUgaGGUCAUC--GACCGUc -3'
miRNA:   3'- aagCGCGGAAg-CCAGUAGguCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 1115 0.69 0.525673
Target:  5'- --aGCGCCUcaaGGcCAUCUacgaAGGCCGCg -3'
miRNA:   3'- aagCGCGGAag-CCaGUAGG----UCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 33378 0.71 0.431177
Target:  5'- aUCGCGCCgacgUgguagaugaaguacgGGUCGUgCAGGCUGCg -3'
miRNA:   3'- aAGCGCGGaa--G---------------CCAGUAgGUCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 39151 0.74 0.278621
Target:  5'- aUCGUGCUguucaccgagacCGG-CAUCCGGGCCGCg -3'
miRNA:   3'- aAGCGCGGaa----------GCCaGUAGGUCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 69519 0.82 0.08307
Target:  5'- cUCGUcgGCCUUCgGGUCAUCC-GACCGCg -3'
miRNA:   3'- aAGCG--CGGAAG-CCAGUAGGuCUGGCG- -5'
18375 3' -56.8 NC_004681.1 + 9406 1.09 0.001074
Target:  5'- cUUCGCGCCUUCGGUCAUCCAGACCGCu -3'
miRNA:   3'- -AAGCGCGGAAGCCAGUAGGUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.