Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18375 | 3' | -56.8 | NC_004681.1 | + | 9406 | 1.09 | 0.001074 |
Target: 5'- cUUCGCGCCUUCGGUCAUCCAGACCGCu -3' miRNA: 3'- -AAGCGCGGAAGCCAGUAGGUCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 69817 | 0.66 | 0.736637 |
Target: 5'- -cCGUGCCcucugUCGGUUGUCCuG-UCGCu -3' miRNA: 3'- aaGCGCGGa----AGCCAGUAGGuCuGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 9172 | 0.66 | 0.736637 |
Target: 5'- cUUCGaCGCCUUCguGGaCAUCCAG-CUGa -3' miRNA: 3'- -AAGC-GCGGAAG--CCaGUAGGUCuGGCg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 19318 | 0.66 | 0.705585 |
Target: 5'- gUCaGCGCCUUCGGUaugaCCuacgaggacgAGACCGa -3' miRNA: 3'- aAG-CGCGGAAGCCAgua-GG----------UCUGGCg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 15912 | 0.66 | 0.695084 |
Target: 5'- aUCGCcgugGCCg-CGGUCAagaccaUCCAGGCCa- -3' miRNA: 3'- aAGCG----CGGaaGCCAGU------AGGUCUGGcg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 34699 | 0.66 | 0.684526 |
Target: 5'- cUUCgGCGCCUUCGGUgCGggcUUgGGAauucCCGCg -3' miRNA: 3'- -AAG-CGCGGAAGCCA-GU---AGgUCU----GGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 19256 | 0.66 | 0.684526 |
Target: 5'- --aGCGCCa--GGUCuucacCUGGACCGCg -3' miRNA: 3'- aagCGCGGaagCCAGua---GGUCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 43881 | 0.67 | 0.663279 |
Target: 5'- cUCGcCGCCcugcUCGGUCGccUCUAuGGCUGCu -3' miRNA: 3'- aAGC-GCGGa---AGCCAGU--AGGU-CUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 23468 | 0.67 | 0.631225 |
Target: 5'- --gGCGCCgccaaGGUCAUCgCAGACgGg -3' miRNA: 3'- aagCGCGGaag--CCAGUAG-GUCUGgCg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 65264 | 0.67 | 0.620529 |
Target: 5'- aUCGCcuGCCUUgUGGUCGUCCGcGACaGUg -3' miRNA: 3'- aAGCG--CGGAA-GCCAGUAGGU-CUGgCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 75136 | 0.68 | 0.609843 |
Target: 5'- aUUGCGCUga-GGU--UCCuAGACCGCg -3' miRNA: 3'- aAGCGCGGaagCCAguAGG-UCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 1115 | 0.69 | 0.525673 |
Target: 5'- --aGCGCCUcaaGGcCAUCUacgaAGGCCGCg -3' miRNA: 3'- aagCGCGGAag-CCaGUAGG----UCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 39151 | 0.74 | 0.278621 |
Target: 5'- aUCGUGCUguucaccgagacCGG-CAUCCGGGCCGCg -3' miRNA: 3'- aAGCGCGGaa----------GCCaGUAGGUCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 47161 | 0.67 | 0.673921 |
Target: 5'- gUCaGCGCCcgCGGgugCGUUgAGACCGa -3' miRNA: 3'- aAG-CGCGGaaGCCa--GUAGgUCUGGCg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 60198 | 0.68 | 0.567364 |
Target: 5'- cUCGCGCg--CGGUCuUCCAGAgcuccaucgucuUCGCg -3' miRNA: 3'- aAGCGCGgaaGCCAGuAGGUCU------------GGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 10735 | 0.68 | 0.567364 |
Target: 5'- --gGCGCCUUCcaUCAUugCCAGGCCGa -3' miRNA: 3'- aagCGCGGAAGccAGUA--GGUCUGGCg -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 20019 | 0.69 | 0.535998 |
Target: 5'- --aGCGCCUUgaGGUCAUC--GACCGUc -3' miRNA: 3'- aagCGCGGAAg-CCAGUAGguCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 33378 | 0.71 | 0.431177 |
Target: 5'- aUCGCGCCgacgUgguagaugaaguacgGGUCGUgCAGGCUGCg -3' miRNA: 3'- aAGCGCGGaa--G---------------CCAGUAgGUCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 69519 | 0.82 | 0.08307 |
Target: 5'- cUCGUcgGCCUUCgGGUCAUCC-GACCGCg -3' miRNA: 3'- aAGCG--CGGAAG-CCAGUAGGuCUGGCG- -5' |
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18375 | 3' | -56.8 | NC_004681.1 | + | 68784 | 0.66 | 0.684526 |
Target: 5'- aUgGCGCCg-CGGUCGUUCAuGAaCGCg -3' miRNA: 3'- aAgCGCGGaaGCCAGUAGGU-CUgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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