miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18375 5' -50.3 NC_004681.1 + 34449 0.66 0.961926
Target:  5'- aUGACgGUGCcgccgacGAUGACCuGCcguggcacgaAGCAGCg -3'
miRNA:   3'- -ACUGgUACGu------CUACUGGuUG----------UCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 60032 0.66 0.961926
Target:  5'- cGACguUGCGGA-GGCCGuCAGCcauGCc -3'
miRNA:   3'- aCUGguACGUCUaCUGGUuGUCGu--UG- -5'
18375 5' -50.3 NC_004681.1 + 38820 0.66 0.961926
Target:  5'- aGACCAUcCGGGccuaCGGCGGCAGCg -3'
miRNA:   3'- aCUGGUAcGUCUacugGUUGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 5254 0.66 0.961926
Target:  5'- gUGGgCAUGCAGuUGgagcGCCAauucucgcucuACGGCGGCa -3'
miRNA:   3'- -ACUgGUACGUCuAC----UGGU-----------UGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 20793 0.66 0.957953
Target:  5'- gGGCCAUGC-GAUGGuCCGGuCGGguCGACa -3'
miRNA:   3'- aCUGGUACGuCUACU-GGUU-GUC--GUUG- -5'
18375 5' -50.3 NC_004681.1 + 45934 0.66 0.957953
Target:  5'- cGGCUAUGCAGgcGGCUucCGGUAc- -3'
miRNA:   3'- aCUGGUACGUCuaCUGGuuGUCGUug -5'
18375 5' -50.3 NC_004681.1 + 28018 0.66 0.957953
Target:  5'- -uACCAgcggugGCAGcaaGACCGACGGCGcugGCg -3'
miRNA:   3'- acUGGUa-----CGUCua-CUGGUUGUCGU---UG- -5'
18375 5' -50.3 NC_004681.1 + 53851 0.66 0.957953
Target:  5'- gGGCCAUGCGGAcuggggggUGGCCuACAuCAu- -3'
miRNA:   3'- aCUGGUACGUCU--------ACUGGuUGUcGUug -5'
18375 5' -50.3 NC_004681.1 + 27433 0.66 0.953704
Target:  5'- uUGACCucgGCA--UGAUCAugGGCGAg -3'
miRNA:   3'- -ACUGGua-CGUcuACUGGUugUCGUUg -5'
18375 5' -50.3 NC_004681.1 + 9929 0.66 0.953704
Target:  5'- cGAagAUGCGGAUGAU--GCuGCAACg -3'
miRNA:   3'- aCUggUACGUCUACUGguUGuCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 74420 0.66 0.953704
Target:  5'- aUGGCCGUGUAuucGUGGCCcaucaucuuGCGGCAGg -3'
miRNA:   3'- -ACUGGUACGUc--UACUGGu--------UGUCGUUg -5'
18375 5' -50.3 NC_004681.1 + 54857 0.66 0.953704
Target:  5'- cGACCGgcugacGCcaaGGAcGACCG-CGGCAACa -3'
miRNA:   3'- aCUGGUa-----CG---UCUaCUGGUuGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 61474 0.66 0.949175
Target:  5'- cGAUCAUGCgggcggAGGUGGCCucgauguucuuGGCGcGCAGCu -3'
miRNA:   3'- aCUGGUACG------UCUACUGG-----------UUGU-CGUUG- -5'
18375 5' -50.3 NC_004681.1 + 12377 0.66 0.949175
Target:  5'- aGACCu--CGGGUGgcACCAccaccGCGGCGACg -3'
miRNA:   3'- aCUGGuacGUCUAC--UGGU-----UGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 58346 0.66 0.949175
Target:  5'- aGAUCAUG---GUGACCAACAcCGACa -3'
miRNA:   3'- aCUGGUACgucUACUGGUUGUcGUUG- -5'
18375 5' -50.3 NC_004681.1 + 70335 0.66 0.947284
Target:  5'- aUGGCCAgguacgucucgccGUAGAUGuCCAGCgucgaGGCGACc -3'
miRNA:   3'- -ACUGGUa------------CGUCUACuGGUUG-----UCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 56 0.66 0.944361
Target:  5'- cUGACC-UGCGGuuuuGUGuCCuACAGCAAa -3'
miRNA:   3'- -ACUGGuACGUC----UACuGGuUGUCGUUg -5'
18375 5' -50.3 NC_004681.1 + 41565 0.66 0.944361
Target:  5'- -cGCCAUGCAGc--GCCAccccGCAgGCAGCg -3'
miRNA:   3'- acUGGUACGUCuacUGGU----UGU-CGUUG- -5'
18375 5' -50.3 NC_004681.1 + 47317 0.66 0.944361
Target:  5'- -uGCCGUGgAGAUGACCGcGgGGguGCc -3'
miRNA:   3'- acUGGUACgUCUACUGGU-UgUCguUG- -5'
18375 5' -50.3 NC_004681.1 + 59435 0.66 0.944361
Target:  5'- aUGGCCuggucacccuUGgAGGUGGCCGA-GGCAACc -3'
miRNA:   3'- -ACUGGu---------ACgUCUACUGGUUgUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.