miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18375 5' -50.3 NC_004681.1 + 52224 0.66 0.943864
Target:  5'- gGACCAggaggagGCGGAUGGCCAcccccguGCccucGUAGCc -3'
miRNA:   3'- aCUGGUa------CGUCUACUGGU-------UGu---CGUUG- -5'
18375 5' -50.3 NC_004681.1 + 69225 0.66 0.939259
Target:  5'- cGACU-UGCAGAgUGGCCAGC-GCGu- -3'
miRNA:   3'- aCUGGuACGUCU-ACUGGUUGuCGUug -5'
18375 5' -50.3 NC_004681.1 + 72161 0.67 0.933864
Target:  5'- gGAUCG-GCgAGAacuUGACCAucuggGCGGCGACg -3'
miRNA:   3'- aCUGGUaCG-UCU---ACUGGU-----UGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 28615 0.67 0.928177
Target:  5'- cGGCgGUGCGGAuggacUGGCCAGgguuguCGGUGGCg -3'
miRNA:   3'- aCUGgUACGUCU-----ACUGGUU------GUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 16416 0.67 0.922195
Target:  5'- aGGCCAUGCGcuacggcuggcuGAUGACCcAUGGUggUc -3'
miRNA:   3'- aCUGGUACGU------------CUACUGGuUGUCGuuG- -5'
18375 5' -50.3 NC_004681.1 + 37654 0.67 0.922195
Target:  5'- cGACUucUGCGGGgccucGCCAGCGGCcGCg -3'
miRNA:   3'- aCUGGu-ACGUCUac---UGGUUGUCGuUG- -5'
18375 5' -50.3 NC_004681.1 + 39194 0.67 0.91592
Target:  5'- uUGcCCGcGCAGGUGGCCAccagggcuugcACGGCGc- -3'
miRNA:   3'- -ACuGGUaCGUCUACUGGU-----------UGUCGUug -5'
18375 5' -50.3 NC_004681.1 + 45438 0.67 0.91592
Target:  5'- aUGGCCgcccucgguGUGguGAUGAaCGACAGCGu- -3'
miRNA:   3'- -ACUGG---------UACguCUACUgGUUGUCGUug -5'
18375 5' -50.3 NC_004681.1 + 61876 0.67 0.91592
Target:  5'- uUGGCgAcGUAGAgcuccUGGCCGAUGGCGGCc -3'
miRNA:   3'- -ACUGgUaCGUCU-----ACUGGUUGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 25656 0.67 0.91592
Target:  5'- aGAUCGUgGCAGAggguaUGGCC-ACAGgGGCg -3'
miRNA:   3'- aCUGGUA-CGUCU-----ACUGGuUGUCgUUG- -5'
18375 5' -50.3 NC_004681.1 + 18995 0.67 0.909353
Target:  5'- cGGCCAgGUAGAacaccUGACCGGCugGGCuGACg -3'
miRNA:   3'- aCUGGUaCGUCU-----ACUGGUUG--UCG-UUG- -5'
18375 5' -50.3 NC_004681.1 + 33432 0.67 0.909353
Target:  5'- aUGugCggGCGGGUGcCCugGACGGCGAa -3'
miRNA:   3'- -ACugGuaCGUCUACuGG--UUGUCGUUg -5'
18375 5' -50.3 NC_004681.1 + 65987 0.67 0.909353
Target:  5'- gGAUCAUGCGcGAgGACCAGucCAGCuuCa -3'
miRNA:   3'- aCUGGUACGU-CUaCUGGUU--GUCGuuG- -5'
18375 5' -50.3 NC_004681.1 + 39885 0.68 0.902496
Target:  5'- cGACCAggcggGCGGA-GACCccCAGCGcGCg -3'
miRNA:   3'- aCUGGUa----CGUCUaCUGGuuGUCGU-UG- -5'
18375 5' -50.3 NC_004681.1 + 9090 0.68 0.895352
Target:  5'- cUGACgGUgGCcgAGGUGgcGCCGACAGCGAg -3'
miRNA:   3'- -ACUGgUA-CG--UCUAC--UGGUUGUCGUUg -5'
18375 5' -50.3 NC_004681.1 + 61773 0.68 0.895352
Target:  5'- aGACCucgGCGGc-GGCCuccGCGGCGGCg -3'
miRNA:   3'- aCUGGua-CGUCuaCUGGu--UGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 23083 0.68 0.895352
Target:  5'- gGACCAgcaGCAGAUcaucaACCAGCuGCGAa -3'
miRNA:   3'- aCUGGUa--CGUCUAc----UGGUUGuCGUUg -5'
18375 5' -50.3 NC_004681.1 + 12467 0.68 0.894622
Target:  5'- cGGCCAcgagcgGUucguacaccuucaAGGUGACCGcggaagGCAGCAACg -3'
miRNA:   3'- aCUGGUa-----CG-------------UCUACUGGU------UGUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 22916 0.68 0.887926
Target:  5'- gUGGCCGUuCAGGUGGaacCCGuuGGCGACa -3'
miRNA:   3'- -ACUGGUAcGUCUACU---GGUugUCGUUG- -5'
18375 5' -50.3 NC_004681.1 + 33381 0.68 0.872247
Target:  5'- cGACCG-GCGucGAUGACaccCGGCAGCg -3'
miRNA:   3'- aCUGGUaCGU--CUACUGguuGUCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.