miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 3' -52.6 NC_004681.1 + 20844 0.66 0.92022
Target:  5'- --aCGGUGAauACACCGUCACaCUc-- -3'
miRNA:   3'- guaGCCACUccUGUGGCAGUG-GAaac -5'
18377 3' -52.6 NC_004681.1 + 65598 0.66 0.907673
Target:  5'- uGUCGauaGUGAGGAUuuugGCCGUCACg---- -3'
miRNA:   3'- gUAGC---CACUCCUG----UGGCAGUGgaaac -5'
18377 3' -52.6 NC_004681.1 + 9651 0.67 0.879381
Target:  5'- aCGUUcGUGAGGGgGCCGggUCACCUc-- -3'
miRNA:   3'- -GUAGcCACUCCUgUGGC--AGUGGAaac -5'
18377 3' -52.6 NC_004681.1 + 34542 0.67 0.87938
Target:  5'- uCGUCGGc---GGCACCGUCAUCUggGa -3'
miRNA:   3'- -GUAGCCacucCUGUGGCAGUGGAaaC- -5'
18377 3' -52.6 NC_004681.1 + 44275 0.67 0.871665
Target:  5'- uCGUUGGUGAuugGGGCGCCGUagCACUc--- -3'
miRNA:   3'- -GUAGCCACU---CCUGUGGCA--GUGGaaac -5'
18377 3' -52.6 NC_004681.1 + 10004 0.68 0.847075
Target:  5'- gAUCuGGUcGAGGACGaCGUCGCCa--- -3'
miRNA:   3'- gUAG-CCA-CUCCUGUgGCAGUGGaaac -5'
18377 3' -52.6 NC_004681.1 + 37824 0.69 0.801755
Target:  5'- gGUCGGUGAGGuugauCACgauggUGUCGCCa--- -3'
miRNA:   3'- gUAGCCACUCCu----GUG-----GCAGUGGaaac -5'
18377 3' -52.6 NC_004681.1 + 21639 0.69 0.801754
Target:  5'- -uUCGGUGAGGcCACCG-CGCgggUGg -3'
miRNA:   3'- guAGCCACUCCuGUGGCaGUGgaaAC- -5'
18377 3' -52.6 NC_004681.1 + 75032 0.69 0.793094
Target:  5'- cCAUCaGUGAGGGCuccgugggcuccgugUCGUCugCUUUGg -3'
miRNA:   3'- -GUAGcCACUCCUGu--------------GGCAGugGAAAC- -5'
18377 3' -52.6 NC_004681.1 + 16776 0.69 0.782328
Target:  5'- --cCGGUGcucGGAgCGCCGUCGCCa--- -3'
miRNA:   3'- guaGCCACu--CCU-GUGGCAGUGGaaac -5'
18377 3' -52.6 NC_004681.1 + 63844 0.69 0.762285
Target:  5'- aGUCGGUgguggcguaccGAGGGCGCCGUagCGCCc--- -3'
miRNA:   3'- gUAGCCA-----------CUCCUGUGGCA--GUGGaaac -5'
18377 3' -52.6 NC_004681.1 + 52612 0.69 0.751031
Target:  5'- aGUCGGUGAGGucgaacuCGCCGUCuaggcacGCCcagUGa -3'
miRNA:   3'- gUAGCCACUCCu------GUGGCAG-------UGGaa-AC- -5'
18377 3' -52.6 NC_004681.1 + 9054 0.7 0.69935
Target:  5'- uCGUCGGccAGGACACUGUCGCg---- -3'
miRNA:   3'- -GUAGCCacUCCUGUGGCAGUGgaaac -5'
18377 3' -52.6 NC_004681.1 + 35477 0.72 0.634076
Target:  5'- --gCGGUGuGuACGCCGUCGCCUUc- -3'
miRNA:   3'- guaGCCACuCcUGUGGCAGUGGAAac -5'
18377 3' -52.6 NC_004681.1 + 1332 0.73 0.579525
Target:  5'- cCAUCGGUGGGGAUcgGCuCGUCGCg---- -3'
miRNA:   3'- -GUAGCCACUCCUG--UG-GCAGUGgaaac -5'
18377 3' -52.6 NC_004681.1 + 3550 0.73 0.579525
Target:  5'- --aCGGUGGGGACgGgCGUCACCgaagUGa -3'
miRNA:   3'- guaGCCACUCCUG-UgGCAGUGGaa--AC- -5'
18377 3' -52.6 NC_004681.1 + 10481 1.08 0.003417
Target:  5'- gCAUCGGUGAGGACACCGUCACCUUUGu -3'
miRNA:   3'- -GUAGCCACUCCUGUGGCAGUGGAAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.