miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 59611 0.66 0.666682
Target:  5'- uGGCGucaccAGGGCGCucGAcaUCCGGCacguccacaaGCGGg -3'
miRNA:   3'- -CCGU-----UCCCGCG--CUucAGGCUGg---------CGCC- -5'
18377 5' -58.8 NC_004681.1 + 16524 0.66 0.665652
Target:  5'- uGGCGGGuGGCgGCaacGGUCCccacggcGGCCGUGGu -3'
miRNA:   3'- -CCGUUC-CCG-CGcu-UCAGG-------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 17610 0.66 0.656364
Target:  5'- cGGCucGGGCGCGGA---CGAccCCGCGu -3'
miRNA:   3'- -CCGuuCCCGCGCUUcagGCU--GGCGCc -5'
18377 5' -58.8 NC_004681.1 + 22369 0.66 0.653264
Target:  5'- cGGCGAGGaccuccccGaCGUcGAGUggacgcuggucaccCCGGCCGCGGa -3'
miRNA:   3'- -CCGUUCC--------C-GCGcUUCA--------------GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 47536 0.66 0.646025
Target:  5'- uGGCu-GGGUGCGcuGcCCGgAUUGCGGu -3'
miRNA:   3'- -CCGuuCCCGCGCuuCaGGC-UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5924 0.66 0.642921
Target:  5'- uGGUggaaGAGGGCaUGGAGcCCauuccgcugcaguuGACCGCGGu -3'
miRNA:   3'- -CCG----UUCCCGcGCUUCaGG--------------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 34499 0.66 0.635675
Target:  5'- cGcCAAGGGUGCaGAGUuuGAUCG-GGa -3'
miRNA:   3'- cC-GUUCCCGCGcUUCAggCUGGCgCC- -5'
18377 5' -58.8 NC_004681.1 + 22375 0.66 0.635675
Target:  5'- gGGC-AGGGCGCccacgCCGcCaCGCGGa -3'
miRNA:   3'- -CCGuUCCCGCGcuucaGGCuG-GCGCC- -5'
18377 5' -58.8 NC_004681.1 + 41962 0.66 0.635675
Target:  5'- uGCGAGGuagGCGUGGgacaGGUCgGcuCCGCGGa -3'
miRNA:   3'- cCGUUCC---CGCGCU----UCAGgCu-GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7169 0.66 0.635675
Target:  5'- cGGUggGGG-GUGccGUCCuucauggcGCCGCGGu -3'
miRNA:   3'- -CCGuuCCCgCGCuuCAGGc-------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 52314 0.67 0.614975
Target:  5'- aGGUcGGGGaugGCGggG-CCGuucuugGCCGUGGa -3'
miRNA:   3'- -CCGuUCCCg--CGCuuCaGGC------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 46953 0.67 0.604641
Target:  5'- aGGCGguugaucaucGGGGUGcCGggG-CgGuuGCCGCGGg -3'
miRNA:   3'- -CCGU----------UCCCGC-GCuuCaGgC--UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 49570 0.67 0.604641
Target:  5'- gGGCAguAGGGCuuGccGUCCuuguagcgggGGCCGUGGa -3'
miRNA:   3'- -CCGU--UCCCGcgCuuCAGG----------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 58402 0.67 0.604641
Target:  5'- cGCGuGGGCaaGAAGUCCcgcaccuucuCCGCGGc -3'
miRNA:   3'- cCGUuCCCGcgCUUCAGGcu--------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 693 0.67 0.594327
Target:  5'- aGCAccacaucgaGGGGCcauGCGAGGUCUGcCUGcCGGg -3'
miRNA:   3'- cCGU---------UCCCG---CGCUUCAGGCuGGC-GCC- -5'
18377 5' -58.8 NC_004681.1 + 22520 0.67 0.584043
Target:  5'- -uCAGGGuguaGUGCGGAGgguugCCGuCCGCGGc -3'
miRNA:   3'- ccGUUCC----CGCGCUUCa----GGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 6283 0.67 0.573793
Target:  5'- -aCGAGGGcCGCGAgaucauGGgCCuGCCGCGGu -3'
miRNA:   3'- ccGUUCCC-GCGCU------UCaGGcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 59163 0.67 0.573793
Target:  5'- aGGCAAGGGUuCGcAGGUUCG-CCaCGGu -3'
miRNA:   3'- -CCGUUCCCGcGC-UUCAGGCuGGcGCC- -5'
18377 5' -58.8 NC_004681.1 + 7455 0.68 0.563586
Target:  5'- nGGCuu-GGCGgGAGGcUUCG-CCGCGGc -3'
miRNA:   3'- -CCGuucCCGCgCUUC-AGGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 3225 0.68 0.563586
Target:  5'- gGGCGAgccgcuGGGCGCGcgaUCCGAucagguagucCUGCGGg -3'
miRNA:   3'- -CCGUU------CCCGCGCuucAGGCU----------GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.