Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 42787 | 0.71 | 0.352112 |
|
Target: 5'- uGCcAGGGgGCGAAGUgCaACCGCGa -3' miRNA: 3'- cCGuUCCCgCGCUUCAgGcUGGCGCc -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 18515 | 0.72 | 0.336537 |
|
Target: 5'- aGCGAugcccgauccGGGUGCGAAGgcguuugCCG-CCGCGGc -3' miRNA: 3'- cCGUU----------CCCGCGCUUCa------GGCuGGCGCC- -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 18271 | 0.72 | 0.336537 |
|
Target: 5'- cGGCAAcuccGGGCGCGGcacggccgcAGUCCucGACUgGCGGu -3' miRNA: 3'- -CCGUU----CCCGCGCU---------UCAGG--CUGG-CGCC- -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 28768 | 0.72 | 0.306913 |
|
Target: 5'- aGCGcccgcGGGUGCGuuGAGaCCGACCGUGGg -3' miRNA: 3'- cCGUu----CCCGCGC--UUCaGGCUGGCGCC- -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 16583 | 0.72 | 0.314128 |
|
Target: 5'- uGCcGGGGCGCGgcG-CCGAguaguCCGUGGg -3' miRNA: 3'- cCGuUCCCGCGCuuCaGGCU-----GGCGCC- -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 2023 | 0.73 | 0.299826 |
|
Target: 5'- cGGcCAGGuGGuCGUGGAGggcggCCGcACCGCGGa -3' miRNA: 3'- -CC-GUUC-CC-GCGCUUCa----GGC-UGGCGCC- -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 5295 | 0.74 | 0.262476 |
|
Target: 5'- uGGCGAcagcucggccauggcGGGCGCGGacagGGUCUGACCGUu- -3' miRNA: 3'- -CCGUU---------------CCCGCGCU----UCAGGCUGGCGcc -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 39249 | 0.8 | 0.106334 |
|
Target: 5'- cGGCAAGGGCGCcAAGggCCG-CCGCGu -3' miRNA: 3'- -CCGUUCCCGCGcUUCa-GGCuGGCGCc -5' |
|||||||
| 18377 | 5' | -58.8 | NC_004681.1 | + | 10515 | 1.13 | 0.000478 |
|
Target: 5'- cGGCAAGGGCGCGAAGUCCGACCGCGGa -3' miRNA: 3'- -CCGUUCCCGCGCUUCAGGCUGGCGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home