miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 10515 1.13 0.000478
Target:  5'- cGGCAAGGGCGCGAAGUCCGACCGCGGa -3'
miRNA:   3'- -CCGUUCCCGCGCUUCAGGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 39249 0.8 0.106334
Target:  5'- cGGCAAGGGCGCcAAGggCCG-CCGCGu -3'
miRNA:   3'- -CCGUUCCCGCGcUUCa-GGCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 5295 0.74 0.262476
Target:  5'- uGGCGAcagcucggccauggcGGGCGCGGacagGGUCUGACCGUu- -3'
miRNA:   3'- -CCGUU---------------CCCGCGCU----UCAGGCUGGCGcc -5'
18377 5' -58.8 NC_004681.1 + 2023 0.73 0.299826
Target:  5'- cGGcCAGGuGGuCGUGGAGggcggCCGcACCGCGGa -3'
miRNA:   3'- -CC-GUUC-CC-GCGCUUCa----GGC-UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 28768 0.72 0.306913
Target:  5'- aGCGcccgcGGGUGCGuuGAGaCCGACCGUGGg -3'
miRNA:   3'- cCGUu----CCCGCGC--UUCaGGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 16583 0.72 0.314128
Target:  5'- uGCcGGGGCGCGgcG-CCGAguaguCCGUGGg -3'
miRNA:   3'- cCGuUCCCGCGCuuCaGGCU-----GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18515 0.72 0.336537
Target:  5'- aGCGAugcccgauccGGGUGCGAAGgcguuugCCG-CCGCGGc -3'
miRNA:   3'- cCGUU----------CCCGCGCUUCa------GGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18271 0.72 0.336537
Target:  5'- cGGCAAcuccGGGCGCGGcacggccgcAGUCCucGACUgGCGGu -3'
miRNA:   3'- -CCGUU----CCCGCGCU---------UCAGG--CUGG-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 42787 0.71 0.352112
Target:  5'- uGCcAGGGgGCGAAGUgCaACCGCGa -3'
miRNA:   3'- cCGuUCCCgCGCUUCAgGcUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 24888 0.71 0.376417
Target:  5'- uGGCGAGGGCgGCGAcc-CCGGCaaGUGGg -3'
miRNA:   3'- -CCGUUCCCG-CGCUucaGGCUGg-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 11297 0.71 0.393238
Target:  5'- gGGUggGGGacaggGUGAGGucUCCGACUGCGc -3'
miRNA:   3'- -CCGuuCCCg----CGCUUC--AGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 37750 0.7 0.410539
Target:  5'- uGGCGAGGcccCGCaGAAGUCgGAgCGCGa -3'
miRNA:   3'- -CCGUUCCc--GCG-CUUCAGgCUgGCGCc -5'
18377 5' -58.8 NC_004681.1 + 45182 0.7 0.410539
Target:  5'- aGCGAGaccGCgGCGAGGgccUCGACCGCGGc -3'
miRNA:   3'- cCGUUCc--CG-CGCUUCa--GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 30950 0.7 0.411416
Target:  5'- cGGCGGGcGGCGUGccguccuccacgauGGGUCCGggcagguaggcccagGCCGUGGc -3'
miRNA:   3'- -CCGUUC-CCGCGC--------------UUCAGGC---------------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7479 0.7 0.437356
Target:  5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3'
miRNA:   3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 20641 0.7 0.443757
Target:  5'- cGCGGGGGUGUccucggacuacaucGAGGUC--ACCGCGGa -3'
miRNA:   3'- cCGUUCCCGCG--------------CUUCAGgcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5849 0.69 0.454852
Target:  5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3'
miRNA:   3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 18202 0.69 0.483223
Target:  5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3'
miRNA:   3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 75531 0.69 0.493839
Target:  5'- aGGCAcguGGGCuGCGccgcGAGUaCGGCCGCGcGg -3'
miRNA:   3'- -CCGUu--CCCG-CGC----UUCAgGCUGGCGC-C- -5'
18377 5' -58.8 NC_004681.1 + 16033 0.69 0.503581
Target:  5'- uGGCAAGGGCGCcg---CCGcugucACCGCa- -3'
miRNA:   3'- -CCGUUCCCGCGcuucaGGC-----UGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.