miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 3225 0.68 0.563586
Target:  5'- gGGCGAgccgcuGGGCGCGcgaUCCGAucagguagucCUGCGGg -3'
miRNA:   3'- -CCGUU------CCCGCGCuucAGGCU----------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 12080 0.68 0.553428
Target:  5'- aGGcCGAGuacguGGC-CGAGGUCCGcCCGCGc -3'
miRNA:   3'- -CC-GUUC-----CCGcGCUUCAGGCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 40532 0.68 0.543324
Target:  5'- -uCAAGGGCGcCGAGGUCCaACagCGCGc -3'
miRNA:   3'- ccGUUCCCGC-GCUUCAGGcUG--GCGCc -5'
18377 5' -58.8 NC_004681.1 + 50411 0.68 0.543324
Target:  5'- -uCGGGGGUGCccauGAGUucagcgUCGGCCGCGGg -3'
miRNA:   3'- ccGUUCCCGCGc---UUCA------GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 24763 0.68 0.542317
Target:  5'- uGGCGAucagcucGGGCGgGuuGUCgGGguCCGCGGu -3'
miRNA:   3'- -CCGUU-------CCCGCgCuuCAGgCU--GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 45046 0.68 0.532282
Target:  5'- aGGUcccuagaGGGGGaCGcCGAAGcaUCCG-CCGCGGu -3'
miRNA:   3'- -CCG-------UUCCC-GC-GCUUC--AGGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 8286 0.68 0.531282
Target:  5'- uGGCGAGGGCuuccuucuucuccGCGGcggucuuGGUCuCGuCCGCGu -3'
miRNA:   3'- -CCGUUCCCG-------------CGCU-------UCAG-GCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 7375 0.69 0.503581
Target:  5'- cGCAGGcGGCGCacucggcgccGAGGUggaCGGCCGCGu -3'
miRNA:   3'- cCGUUC-CCGCG----------CUUCAg--GCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 56281 0.69 0.503581
Target:  5'- gGGCAugAGGaGCGCGcuGGacuUgUGGCCGCGGa -3'
miRNA:   3'- -CCGU--UCC-CGCGCu-UC---AgGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 16033 0.69 0.503581
Target:  5'- uGGCAAGGGCGCcg---CCGcugucACCGCa- -3'
miRNA:   3'- -CCGUUCCCGCGcuucaGGC-----UGGCGcc -5'
18377 5' -58.8 NC_004681.1 + 75531 0.69 0.493839
Target:  5'- aGGCAcguGGGCuGCGccgcGAGUaCGGCCGCGcGg -3'
miRNA:   3'- -CCGUu--CCCG-CGC----UUCAgGCUGGCGC-C- -5'
18377 5' -58.8 NC_004681.1 + 18202 0.69 0.483223
Target:  5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3'
miRNA:   3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5849 0.69 0.454852
Target:  5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3'
miRNA:   3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 20641 0.7 0.443757
Target:  5'- cGCGGGGGUGUccucggacuacaucGAGGUC--ACCGCGGa -3'
miRNA:   3'- cCGUUCCCGCG--------------CUUCAGgcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7479 0.7 0.437356
Target:  5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3'
miRNA:   3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 30950 0.7 0.411416
Target:  5'- cGGCGGGcGGCGUGccguccuccacgauGGGUCCGggcagguaggcccagGCCGUGGc -3'
miRNA:   3'- -CCGUUC-CCGCGC--------------UUCAGGC---------------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 37750 0.7 0.410539
Target:  5'- uGGCGAGGcccCGCaGAAGUCgGAgCGCGa -3'
miRNA:   3'- -CCGUUCCc--GCG-CUUCAGgCUgGCGCc -5'
18377 5' -58.8 NC_004681.1 + 45182 0.7 0.410539
Target:  5'- aGCGAGaccGCgGCGAGGgccUCGACCGCGGc -3'
miRNA:   3'- cCGUUCc--CG-CGCUUCa--GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 11297 0.71 0.393238
Target:  5'- gGGUggGGGacaggGUGAGGucUCCGACUGCGc -3'
miRNA:   3'- -CCGuuCCCg----CGCUUC--AGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 24888 0.71 0.376417
Target:  5'- uGGCGAGGGCgGCGAcc-CCGGCaaGUGGg -3'
miRNA:   3'- -CCGUUCCCG-CGCUucaGGCUGg-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.