Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 693 | 0.67 | 0.594327 |
Target: 5'- aGCAccacaucgaGGGGCcauGCGAGGUCUGcCUGcCGGg -3' miRNA: 3'- cCGU---------UCCCG---CGCUUCAGGCuGGC-GCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 2023 | 0.73 | 0.299826 |
Target: 5'- cGGcCAGGuGGuCGUGGAGggcggCCGcACCGCGGa -3' miRNA: 3'- -CC-GUUC-CC-GCGCUUCa----GGC-UGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 3225 | 0.68 | 0.563586 |
Target: 5'- gGGCGAgccgcuGGGCGCGcgaUCCGAucagguagucCUGCGGg -3' miRNA: 3'- -CCGUU------CCCGCGCuucAGGCU----------GGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 5295 | 0.74 | 0.262476 |
Target: 5'- uGGCGAcagcucggccauggcGGGCGCGGacagGGUCUGACCGUu- -3' miRNA: 3'- -CCGUU---------------CCCGCGCU----UCAGGCUGGCGcc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 5849 | 0.69 | 0.454852 |
Target: 5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3' miRNA: 3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 5924 | 0.66 | 0.642921 |
Target: 5'- uGGUggaaGAGGGCaUGGAGcCCauuccgcugcaguuGACCGCGGu -3' miRNA: 3'- -CCG----UUCCCGcGCUUCaGG--------------CUGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 6283 | 0.67 | 0.573793 |
Target: 5'- -aCGAGGGcCGCGAgaucauGGgCCuGCCGCGGu -3' miRNA: 3'- ccGUUCCC-GCGCU------UCaGGcUGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 7169 | 0.66 | 0.635675 |
Target: 5'- cGGUggGGG-GUGccGUCCuucauggcGCCGCGGu -3' miRNA: 3'- -CCGuuCCCgCGCuuCAGGc-------UGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 7375 | 0.69 | 0.503581 |
Target: 5'- cGCAGGcGGCGCacucggcgccGAGGUggaCGGCCGCGu -3' miRNA: 3'- cCGUUC-CCGCG----------CUUCAg--GCUGGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 7455 | 0.68 | 0.563586 |
Target: 5'- nGGCuu-GGCGgGAGGcUUCG-CCGCGGc -3' miRNA: 3'- -CCGuucCCGCgCUUC-AGGCuGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 7479 | 0.7 | 0.437356 |
Target: 5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3' miRNA: 3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 8286 | 0.68 | 0.531282 |
Target: 5'- uGGCGAGGGCuuccuucuucuccGCGGcggucuuGGUCuCGuCCGCGu -3' miRNA: 3'- -CCGUUCCCG-------------CGCU-------UCAG-GCuGGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 10515 | 1.13 | 0.000478 |
Target: 5'- cGGCAAGGGCGCGAAGUCCGACCGCGGa -3' miRNA: 3'- -CCGUUCCCGCGCUUCAGGCUGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 11297 | 0.71 | 0.393238 |
Target: 5'- gGGUggGGGacaggGUGAGGucUCCGACUGCGc -3' miRNA: 3'- -CCGuuCCCg----CGCUUC--AGGCUGGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 12080 | 0.68 | 0.553428 |
Target: 5'- aGGcCGAGuacguGGC-CGAGGUCCGcCCGCGc -3' miRNA: 3'- -CC-GUUC-----CCGcGCUUCAGGCuGGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 16033 | 0.69 | 0.503581 |
Target: 5'- uGGCAAGGGCGCcg---CCGcugucACCGCa- -3' miRNA: 3'- -CCGUUCCCGCGcuucaGGC-----UGGCGcc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 16524 | 0.66 | 0.665652 |
Target: 5'- uGGCGGGuGGCgGCaacGGUCCccacggcGGCCGUGGu -3' miRNA: 3'- -CCGUUC-CCG-CGcu-UCAGG-------CUGGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 16583 | 0.72 | 0.314128 |
Target: 5'- uGCcGGGGCGCGgcG-CCGAguaguCCGUGGg -3' miRNA: 3'- cCGuUCCCGCGCuuCaGGCU-----GGCGCC- -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 17610 | 0.66 | 0.656364 |
Target: 5'- cGGCucGGGCGCGGA---CGAccCCGCGu -3' miRNA: 3'- -CCGuuCCCGCGCUUcagGCU--GGCGCc -5' |
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18377 | 5' | -58.8 | NC_004681.1 | + | 18202 | 0.69 | 0.483223 |
Target: 5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3' miRNA: 3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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