miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 28768 0.72 0.306913
Target:  5'- aGCGcccgcGGGUGCGuuGAGaCCGACCGUGGg -3'
miRNA:   3'- cCGUu----CCCGCGC--UUCaGGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 24888 0.71 0.376417
Target:  5'- uGGCGAGGGCgGCGAcc-CCGGCaaGUGGg -3'
miRNA:   3'- -CCGUUCCCG-CGCUucaGGCUGg-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 24763 0.68 0.542317
Target:  5'- uGGCGAucagcucGGGCGgGuuGUCgGGguCCGCGGu -3'
miRNA:   3'- -CCGUU-------CCCGCgCuuCAGgCU--GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 22520 0.67 0.584043
Target:  5'- -uCAGGGuguaGUGCGGAGgguugCCGuCCGCGGc -3'
miRNA:   3'- ccGUUCC----CGCGCUUCa----GGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 22375 0.66 0.635675
Target:  5'- gGGC-AGGGCGCccacgCCGcCaCGCGGa -3'
miRNA:   3'- -CCGuUCCCGCGcuucaGGCuG-GCGCC- -5'
18377 5' -58.8 NC_004681.1 + 22369 0.66 0.653264
Target:  5'- cGGCGAGGaccuccccGaCGUcGAGUggacgcuggucaccCCGGCCGCGGa -3'
miRNA:   3'- -CCGUUCC--------C-GCGcUUCA--------------GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 20641 0.7 0.443757
Target:  5'- cGCGGGGGUGUccucggacuacaucGAGGUC--ACCGCGGa -3'
miRNA:   3'- cCGUUCCCGCG--------------CUUCAGgcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18515 0.72 0.336537
Target:  5'- aGCGAugcccgauccGGGUGCGAAGgcguuugCCG-CCGCGGc -3'
miRNA:   3'- cCGUU----------CCCGCGCUUCa------GGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18271 0.72 0.336537
Target:  5'- cGGCAAcuccGGGCGCGGcacggccgcAGUCCucGACUgGCGGu -3'
miRNA:   3'- -CCGUU----CCCGCGCU---------UCAGG--CUGG-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 18202 0.69 0.483223
Target:  5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3'
miRNA:   3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 17610 0.66 0.656364
Target:  5'- cGGCucGGGCGCGGA---CGAccCCGCGu -3'
miRNA:   3'- -CCGuuCCCGCGCUUcagGCU--GGCGCc -5'
18377 5' -58.8 NC_004681.1 + 16583 0.72 0.314128
Target:  5'- uGCcGGGGCGCGgcG-CCGAguaguCCGUGGg -3'
miRNA:   3'- cCGuUCCCGCGCuuCaGGCU-----GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 16524 0.66 0.665652
Target:  5'- uGGCGGGuGGCgGCaacGGUCCccacggcGGCCGUGGu -3'
miRNA:   3'- -CCGUUC-CCG-CGcu-UCAGG-------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 16033 0.69 0.503581
Target:  5'- uGGCAAGGGCGCcg---CCGcugucACCGCa- -3'
miRNA:   3'- -CCGUUCCCGCGcuucaGGC-----UGGCGcc -5'
18377 5' -58.8 NC_004681.1 + 12080 0.68 0.553428
Target:  5'- aGGcCGAGuacguGGC-CGAGGUCCGcCCGCGc -3'
miRNA:   3'- -CC-GUUC-----CCGcGCUUCAGGCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 11297 0.71 0.393238
Target:  5'- gGGUggGGGacaggGUGAGGucUCCGACUGCGc -3'
miRNA:   3'- -CCGuuCCCg----CGCUUC--AGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 10515 1.13 0.000478
Target:  5'- cGGCAAGGGCGCGAAGUCCGACCGCGGa -3'
miRNA:   3'- -CCGUUCCCGCGCUUCAGGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 8286 0.68 0.531282
Target:  5'- uGGCGAGGGCuuccuucuucuccGCGGcggucuuGGUCuCGuCCGCGu -3'
miRNA:   3'- -CCGUUCCCG-------------CGCU-------UCAG-GCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 7479 0.7 0.437356
Target:  5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3'
miRNA:   3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7455 0.68 0.563586
Target:  5'- nGGCuu-GGCGgGAGGcUUCG-CCGCGGc -3'
miRNA:   3'- -CCGuucCCGCgCUUC-AGGCuGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.