miRNA display CGI


Results 41 - 49 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 7375 0.69 0.503581
Target:  5'- cGCAGGcGGCGCacucggcgccGAGGUggaCGGCCGCGu -3'
miRNA:   3'- cCGUUC-CCGCG----------CUUCAg--GCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 7169 0.66 0.635675
Target:  5'- cGGUggGGG-GUGccGUCCuucauggcGCCGCGGu -3'
miRNA:   3'- -CCGuuCCCgCGCuuCAGGc-------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 6283 0.67 0.573793
Target:  5'- -aCGAGGGcCGCGAgaucauGGgCCuGCCGCGGu -3'
miRNA:   3'- ccGUUCCC-GCGCU------UCaGGcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5924 0.66 0.642921
Target:  5'- uGGUggaaGAGGGCaUGGAGcCCauuccgcugcaguuGACCGCGGu -3'
miRNA:   3'- -CCG----UUCCCGcGCUUCaGG--------------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5849 0.69 0.454852
Target:  5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3'
miRNA:   3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 5295 0.74 0.262476
Target:  5'- uGGCGAcagcucggccauggcGGGCGCGGacagGGUCUGACCGUu- -3'
miRNA:   3'- -CCGUU---------------CCCGCGCU----UCAGGCUGGCGcc -5'
18377 5' -58.8 NC_004681.1 + 3225 0.68 0.563586
Target:  5'- gGGCGAgccgcuGGGCGCGcgaUCCGAucagguagucCUGCGGg -3'
miRNA:   3'- -CCGUU------CCCGCGCuucAGGCU----------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 2023 0.73 0.299826
Target:  5'- cGGcCAGGuGGuCGUGGAGggcggCCGcACCGCGGa -3'
miRNA:   3'- -CC-GUUC-CC-GCGCUUCa----GGC-UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 693 0.67 0.594327
Target:  5'- aGCAccacaucgaGGGGCcauGCGAGGUCUGcCUGcCGGg -3'
miRNA:   3'- cCGU---------UCCCG---CGCUUCAGGCuGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.