miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 59611 0.66 0.666682
Target:  5'- uGGCGucaccAGGGCGCucGAcaUCCGGCacguccacaaGCGGg -3'
miRNA:   3'- -CCGU-----UCCCGCG--CUucAGGCUGg---------CGCC- -5'
18377 5' -58.8 NC_004681.1 + 6283 0.67 0.573793
Target:  5'- -aCGAGGGcCGCGAgaucauGGgCCuGCCGCGGu -3'
miRNA:   3'- ccGUUCCC-GCGCU------UCaGGcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 693 0.67 0.594327
Target:  5'- aGCAccacaucgaGGGGCcauGCGAGGUCUGcCUGcCGGg -3'
miRNA:   3'- cCGU---------UCCCG---CGCUUCAGGCuGGC-GCC- -5'
18377 5' -58.8 NC_004681.1 + 58402 0.67 0.604641
Target:  5'- cGCGuGGGCaaGAAGUCCcgcaccuucuCCGCGGc -3'
miRNA:   3'- cCGUuCCCGcgCUUCAGGcu--------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5924 0.66 0.642921
Target:  5'- uGGUggaaGAGGGCaUGGAGcCCauuccgcugcaguuGACCGCGGu -3'
miRNA:   3'- -CCG----UUCCCGcGCUUCaGG--------------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 47536 0.66 0.646025
Target:  5'- uGGCu-GGGUGCGcuGcCCGgAUUGCGGu -3'
miRNA:   3'- -CCGuuCCCGCGCuuCaGGC-UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 22369 0.66 0.653264
Target:  5'- cGGCGAGGaccuccccGaCGUcGAGUggacgcuggucaccCCGGCCGCGGa -3'
miRNA:   3'- -CCGUUCC--------C-GCGcUUCA--------------GGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 17610 0.66 0.656364
Target:  5'- cGGCucGGGCGCGGA---CGAccCCGCGu -3'
miRNA:   3'- -CCGuuCCCGCGCUUcagGCU--GGCGCc -5'
18377 5' -58.8 NC_004681.1 + 16524 0.66 0.665652
Target:  5'- uGGCGGGuGGCgGCaacGGUCCccacggcGGCCGUGGu -3'
miRNA:   3'- -CCGUUC-CCG-CGcu-UCAGG-------CUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 12080 0.68 0.553428
Target:  5'- aGGcCGAGuacguGGC-CGAGGUCCGcCCGCGc -3'
miRNA:   3'- -CC-GUUC-----CCGcGCUUCAGGCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 45046 0.68 0.532282
Target:  5'- aGGUcccuagaGGGGGaCGcCGAAGcaUCCG-CCGCGGu -3'
miRNA:   3'- -CCG-------UUCCC-GC-GCUUC--AGGCuGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 16033 0.69 0.503581
Target:  5'- uGGCAAGGGCGCcg---CCGcugucACCGCa- -3'
miRNA:   3'- -CCGUUCCCGCGcuucaGGC-----UGGCGcc -5'
18377 5' -58.8 NC_004681.1 + 39249 0.8 0.106334
Target:  5'- cGGCAAGGGCGCcAAGggCCG-CCGCGu -3'
miRNA:   3'- -CCGUUCCCGCGcUUCa-GGCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 2023 0.73 0.299826
Target:  5'- cGGcCAGGuGGuCGUGGAGggcggCCGcACCGCGGa -3'
miRNA:   3'- -CC-GUUC-CC-GCGCUUCa----GGC-UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18271 0.72 0.336537
Target:  5'- cGGCAAcuccGGGCGCGGcacggccgcAGUCCucGACUgGCGGu -3'
miRNA:   3'- -CCGUU----CCCGCGCU---------UCAGG--CUGG-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 42787 0.71 0.352112
Target:  5'- uGCcAGGGgGCGAAGUgCaACCGCGa -3'
miRNA:   3'- cCGuUCCCgCGCUUCAgGcUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 24888 0.71 0.376417
Target:  5'- uGGCGAGGGCgGCGAcc-CCGGCaaGUGGg -3'
miRNA:   3'- -CCGUUCCCG-CGCUucaGGCUGg-CGCC- -5'
18377 5' -58.8 NC_004681.1 + 11297 0.71 0.393238
Target:  5'- gGGUggGGGacaggGUGAGGucUCCGACUGCGc -3'
miRNA:   3'- -CCGuuCCCg----CGCUUC--AGGCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 20641 0.7 0.443757
Target:  5'- cGCGGGGGUGUccucggacuacaucGAGGUC--ACCGCGGa -3'
miRNA:   3'- cCGUUCCCGCG--------------CUUCAGgcUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 5849 0.69 0.454852
Target:  5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3'
miRNA:   3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.