Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 5849 | 0.69 | 0.454852 |
Target: 5'- -cCGAGGcucagcagcgccuGCGCGAacAGUUCGACCGCGc -3' miRNA: 3'- ccGUUCC-------------CGCGCU--UCAGGCUGGCGCc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 7375 | 0.69 | 0.503581 |
Target: 5'- cGCAGGcGGCGCacucggcgccGAGGUggaCGGCCGCGu -3' miRNA: 3'- cCGUUC-CCGCG----------CUUCAg--GCUGGCGCc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 8286 | 0.68 | 0.531282 |
Target: 5'- uGGCGAGGGCuuccuucuucuccGCGGcggucuuGGUCuCGuCCGCGu -3' miRNA: 3'- -CCGUUCCCG-------------CGCU-------UCAG-GCuGGCGCc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 24763 | 0.68 | 0.542317 |
Target: 5'- uGGCGAucagcucGGGCGgGuuGUCgGGguCCGCGGu -3' miRNA: 3'- -CCGUU-------CCCGCgCuuCAGgCU--GGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 50411 | 0.68 | 0.543324 |
Target: 5'- -uCGGGGGUGCccauGAGUucagcgUCGGCCGCGGg -3' miRNA: 3'- ccGUUCCCGCGc---UUCA------GGCUGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 40532 | 0.68 | 0.543324 |
Target: 5'- -uCAAGGGCGcCGAGGUCCaACagCGCGc -3' miRNA: 3'- ccGUUCCCGC-GCUUCAGGcUG--GCGCc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 7455 | 0.68 | 0.563586 |
Target: 5'- nGGCuu-GGCGgGAGGcUUCG-CCGCGGc -3' miRNA: 3'- -CCGuucCCGCgCUUC-AGGCuGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 37065 | 0.68 | 0.563586 |
Target: 5'- uGCAAGGGCGUuccGGUgaCGGCCGCc- -3' miRNA: 3'- cCGUUCCCGCGcu-UCAg-GCUGGCGcc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 3225 | 0.68 | 0.563586 |
Target: 5'- gGGCGAgccgcuGGGCGCGcgaUCCGAucagguagucCUGCGGg -3' miRNA: 3'- -CCGUU------CCCGCGCuucAGGCU----------GGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 56281 | 0.69 | 0.503581 |
Target: 5'- gGGCAugAGGaGCGCGcuGGacuUgUGGCCGCGGa -3' miRNA: 3'- -CCGU--UCC-CGCGCu-UC---AgGCUGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 75531 | 0.69 | 0.493839 |
Target: 5'- aGGCAcguGGGCuGCGccgcGAGUaCGGCCGCGcGg -3' miRNA: 3'- -CCGUu--CCCG-CGC----UUCAgGCUGGCGC-C- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 18202 | 0.69 | 0.483223 |
Target: 5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3' miRNA: 3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 7169 | 0.66 | 0.635675 |
Target: 5'- cGGUggGGG-GUGccGUCCuucauggcGCCGCGGu -3' miRNA: 3'- -CCGuuCCCgCGCuuCAGGc-------UGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 28768 | 0.72 | 0.306913 |
Target: 5'- aGCGcccgcGGGUGCGuuGAGaCCGACCGUGGg -3' miRNA: 3'- cCGUu----CCCGCGC--UUCaGGCUGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 16583 | 0.72 | 0.314128 |
Target: 5'- uGCcGGGGCGCGgcG-CCGAguaguCCGUGGg -3' miRNA: 3'- cCGuUCCCGCGCuuCaGGCU-----GGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 18515 | 0.72 | 0.336537 |
Target: 5'- aGCGAugcccgauccGGGUGCGAAGgcguuugCCG-CCGCGGc -3' miRNA: 3'- cCGUU----------CCCGCGCUUCa------GGCuGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 45182 | 0.7 | 0.410539 |
Target: 5'- aGCGAGaccGCgGCGAGGgccUCGACCGCGGc -3' miRNA: 3'- cCGUUCc--CG-CGCUUCa--GGCUGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 37750 | 0.7 | 0.410539 |
Target: 5'- uGGCGAGGcccCGCaGAAGUCgGAgCGCGa -3' miRNA: 3'- -CCGUUCCc--GCG-CUUCAGgCUgGCGCc -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 30950 | 0.7 | 0.411416 |
Target: 5'- cGGCGGGcGGCGUGccguccuccacgauGGGUCCGggcagguaggcccagGCCGUGGc -3' miRNA: 3'- -CCGUUC-CCGCGC--------------UUCAGGC---------------UGGCGCC- -5' |
|||||||
18377 | 5' | -58.8 | NC_004681.1 | + | 7479 | 0.7 | 0.437356 |
Target: 5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3' miRNA: 3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home