miRNA display CGI


Results 41 - 49 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18377 5' -58.8 NC_004681.1 + 37750 0.7 0.410539
Target:  5'- uGGCGAGGcccCGCaGAAGUCgGAgCGCGa -3'
miRNA:   3'- -CCGUUCCc--GCG-CUUCAGgCUgGCGCc -5'
18377 5' -58.8 NC_004681.1 + 30950 0.7 0.411416
Target:  5'- cGGCGGGcGGCGUGccguccuccacgauGGGUCCGggcagguaggcccagGCCGUGGc -3'
miRNA:   3'- -CCGUUC-CCGCGC--------------UUCAGGC---------------UGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7479 0.7 0.437356
Target:  5'- gGGCGGGGGCuucu--UCuCGGCCGCGGg -3'
miRNA:   3'- -CCGUUCCCGcgcuucAG-GCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 18202 0.69 0.483223
Target:  5'- uGGcCGGGGGCGCcgaugccGggGaugCCGAugcccauacCCGCGGg -3'
miRNA:   3'- -CC-GUUCCCGCG-------CuuCa--GGCU---------GGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 75531 0.69 0.493839
Target:  5'- aGGCAcguGGGCuGCGccgcGAGUaCGGCCGCGcGg -3'
miRNA:   3'- -CCGUu--CCCG-CGC----UUCAgGCUGGCGC-C- -5'
18377 5' -58.8 NC_004681.1 + 56281 0.69 0.503581
Target:  5'- gGGCAugAGGaGCGCGcuGGacuUgUGGCCGCGGa -3'
miRNA:   3'- -CCGU--UCC-CGCGCu-UC---AgGCUGGCGCC- -5'
18377 5' -58.8 NC_004681.1 + 7375 0.69 0.503581
Target:  5'- cGCAGGcGGCGCacucggcgccGAGGUggaCGGCCGCGu -3'
miRNA:   3'- cCGUUC-CCGCG----------CUUCAg--GCUGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 8286 0.68 0.531282
Target:  5'- uGGCGAGGGCuuccuucuucuccGCGGcggucuuGGUCuCGuCCGCGu -3'
miRNA:   3'- -CCGUUCCCG-------------CGCU-------UCAG-GCuGGCGCc -5'
18377 5' -58.8 NC_004681.1 + 5295 0.74 0.262476
Target:  5'- uGGCGAcagcucggccauggcGGGCGCGGacagGGUCUGACCGUu- -3'
miRNA:   3'- -CCGUU---------------CCCGCGCU----UCAGGCUGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.