miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18378 5' -56.5 NC_004681.1 + 33335 0.66 0.763645
Target:  5'- ---gUCCAgggCaCCCGCCCGCACaUCa- -3'
miRNA:   3'- cuugAGGUaa-G-GGGUGGGCGUG-AGgg -5'
18378 5' -56.5 NC_004681.1 + 46611 0.66 0.763645
Target:  5'- -cACUCgccgaGgaCCCCGcCCCGCACacgCCCa -3'
miRNA:   3'- cuUGAGg----UaaGGGGU-GGGCGUGa--GGG- -5'
18378 5' -56.5 NC_004681.1 + 70745 0.66 0.763645
Target:  5'- --cCUCCAcuugguggUUCUCCACgCGCACaUCgCCg -3'
miRNA:   3'- cuuGAGGU--------AAGGGGUGgGCGUG-AG-GG- -5'
18378 5' -56.5 NC_004681.1 + 16468 0.66 0.762656
Target:  5'- --gUUCCAgccCCCCACggacuacucggcgCCGCGC-CCCg -3'
miRNA:   3'- cuuGAGGUaa-GGGGUG-------------GGCGUGaGGG- -5'
18378 5' -56.5 NC_004681.1 + 43367 0.66 0.753698
Target:  5'- gGGACgUCAUaUCCCCGgCgCGCACagUCCCu -3'
miRNA:   3'- -CUUGaGGUA-AGGGGUgG-GCGUG--AGGG- -5'
18378 5' -56.5 NC_004681.1 + 63486 0.66 0.743635
Target:  5'- -uACUCac-UCCCCGCCCacacaaugggGCACUUCg -3'
miRNA:   3'- cuUGAGguaAGGGGUGGG----------CGUGAGGg -5'
18378 5' -56.5 NC_004681.1 + 11877 0.66 0.740594
Target:  5'- gGAAUUCCAaUCCCCuauACCCGggacCACUggggauaucgagcgCCCg -3'
miRNA:   3'- -CUUGAGGUaAGGGG---UGGGC----GUGA--------------GGG- -5'
18378 5' -56.5 NC_004681.1 + 23898 0.66 0.71285
Target:  5'- gGGugUCgaggUAUUCCUCGa-CGCGCUCCCa -3'
miRNA:   3'- -CUugAG----GUAAGGGGUggGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 75625 0.66 0.711811
Target:  5'- --uCUCCAccaccguUUCCCCGcaaacCCCGCACUUg- -3'
miRNA:   3'- cuuGAGGU-------AAGGGGU-----GGGCGUGAGgg -5'
18378 5' -56.5 NC_004681.1 + 21523 0.67 0.702425
Target:  5'- uGGGCgCUAUUCguugaCCACCCGCGCgguggCCUc -3'
miRNA:   3'- -CUUGaGGUAAGg----GGUGGGCGUGa----GGG- -5'
18378 5' -56.5 NC_004681.1 + 69112 0.67 0.701379
Target:  5'- aAGCgCCg--CCUCGCCCGCGCccuggccUCCCu -3'
miRNA:   3'- cUUGaGGuaaGGGGUGGGCGUG-------AGGG- -5'
18378 5' -56.5 NC_004681.1 + 41229 0.67 0.681393
Target:  5'- -uGCUCCAgcggUCCCgAUCUGCgucgguccacuGCUCCUc -3'
miRNA:   3'- cuUGAGGUa---AGGGgUGGGCG-----------UGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 17958 0.67 0.670805
Target:  5'- cGGCUCCGUgggCCaCCgcaGCCCaugcggcCACUCCCg -3'
miRNA:   3'- cUUGAGGUAa--GG-GG---UGGGc------GUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 38588 0.67 0.660184
Target:  5'- uGGACgaUCCAUUgUCgGCUCGCACUCUUc -3'
miRNA:   3'- -CUUG--AGGUAAgGGgUGGGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 35895 0.67 0.660184
Target:  5'- cGGGCUCCAUccucgaaUCCCGCCCGaUACgCCUu -3'
miRNA:   3'- -CUUGAGGUAa------GGGGUGGGC-GUGaGGG- -5'
18378 5' -56.5 NC_004681.1 + 51655 0.67 0.660184
Target:  5'- --cCUCCGacgucaUCCCCACCC-CAUggCCCg -3'
miRNA:   3'- cuuGAGGUa-----AGGGGUGGGcGUGa-GGG- -5'
18378 5' -56.5 NC_004681.1 + 12191 0.67 0.649538
Target:  5'- cGGAC-CCGgcgucgggcUUCCCCGCgcgCCGCAUcCCCg -3'
miRNA:   3'- -CUUGaGGU---------AAGGGGUG---GGCGUGaGGG- -5'
18378 5' -56.5 NC_004681.1 + 74391 0.67 0.649538
Target:  5'- gGGACUUgAUgaCCCCGCCCGCgGCgCCa -3'
miRNA:   3'- -CUUGAGgUAa-GGGGUGGGCG-UGaGGg -5'
18378 5' -56.5 NC_004681.1 + 59348 0.68 0.617547
Target:  5'- gGAGCcCUAgucacuggCCCCACCCucuGCUCCCg -3'
miRNA:   3'- -CUUGaGGUaa------GGGGUGGGcg-UGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 34166 0.68 0.606895
Target:  5'- cGACaaagCCGaaggCCCCGCCUGagACUCCCa -3'
miRNA:   3'- cUUGa---GGUaa--GGGGUGGGCg-UGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.