Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18378 | 5' | -56.5 | NC_004681.1 | + | 37632 | 0.69 | 0.575096 |
Target: 5'- --uCUCCAgcUCCUC-CUCGCGCUCCg -3' miRNA: 3'- cuuGAGGUa-AGGGGuGGGCGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 19570 | 0.69 | 0.564574 |
Target: 5'- -cGCUucCCGUUCCCCgcACCCGCGgUCa- -3' miRNA: 3'- cuUGA--GGUAAGGGG--UGGGCGUgAGgg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 29296 | 0.7 | 0.512867 |
Target: 5'- uGGACUCCcgUCaacuCCACUCGCACcaaccUCCUc -3' miRNA: 3'- -CUUGAGGuaAGg---GGUGGGCGUG-----AGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 39599 | 0.7 | 0.492722 |
Target: 5'- cGAgUUCAUagCCuCUGCCCGCACUCUCa -3' miRNA: 3'- cUUgAGGUAa-GG-GGUGGGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 13107 | 0.7 | 0.472948 |
Target: 5'- -cAUUCCGUUaacaCCCGCCC-CGCUgCCCg -3' miRNA: 3'- cuUGAGGUAAg---GGGUGGGcGUGA-GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 23040 | 0.71 | 0.453582 |
Target: 5'- cGGAC-CCGUcaauccacaacgUCCCCGCCCGCAaUCgCg -3' miRNA: 3'- -CUUGaGGUA------------AGGGGUGGGCGUgAGgG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 42319 | 0.72 | 0.397333 |
Target: 5'- aAGCUCaccaUCCCCGCCCacgcgcaGCGCUCCa -3' miRNA: 3'- cUUGAGgua-AGGGGUGGG-------CGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 10896 | 0.73 | 0.363802 |
Target: 5'- cAGCUCCAggcgcgUCgCCACCuCGUGCUCCa -3' miRNA: 3'- cUUGAGGUa-----AGgGGUGG-GCGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 13246 | 0.75 | 0.273374 |
Target: 5'- --uCUCCugcUUCUCCGCCucggCGCGCUCCCg -3' miRNA: 3'- cuuGAGGu--AAGGGGUGG----GCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 26659 | 0.76 | 0.241372 |
Target: 5'- uGAGCUCCAggauUUCCCUguACUCGCugUCgCCg -3' miRNA: 3'- -CUUGAGGU----AAGGGG--UGGGCGugAG-GG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 10930 | 1.12 | 0.000724 |
Target: 5'- gGAACUCCAUUCCCCACCCGCACUCCCg -3' miRNA: 3'- -CUUGAGGUAAGGGGUGGGCGUGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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