Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18378 | 5' | -56.5 | NC_004681.1 | + | 33335 | 0.66 | 0.763645 |
Target: 5'- ---gUCCAgggCaCCCGCCCGCACaUCa- -3' miRNA: 3'- cuugAGGUaa-G-GGGUGGGCGUG-AGgg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 46611 | 0.66 | 0.763645 |
Target: 5'- -cACUCgccgaGgaCCCCGcCCCGCACacgCCCa -3' miRNA: 3'- cuUGAGg----UaaGGGGU-GGGCGUGa--GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 70745 | 0.66 | 0.763645 |
Target: 5'- --cCUCCAcuugguggUUCUCCACgCGCACaUCgCCg -3' miRNA: 3'- cuuGAGGU--------AAGGGGUGgGCGUG-AG-GG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 16468 | 0.66 | 0.762656 |
Target: 5'- --gUUCCAgccCCCCACggacuacucggcgCCGCGC-CCCg -3' miRNA: 3'- cuuGAGGUaa-GGGGUG-------------GGCGUGaGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 43367 | 0.66 | 0.753698 |
Target: 5'- gGGACgUCAUaUCCCCGgCgCGCACagUCCCu -3' miRNA: 3'- -CUUGaGGUA-AGGGGUgG-GCGUG--AGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 63486 | 0.66 | 0.743635 |
Target: 5'- -uACUCac-UCCCCGCCCacacaaugggGCACUUCg -3' miRNA: 3'- cuUGAGguaAGGGGUGGG----------CGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 11877 | 0.66 | 0.740594 |
Target: 5'- gGAAUUCCAaUCCCCuauACCCGggacCACUggggauaucgagcgCCCg -3' miRNA: 3'- -CUUGAGGUaAGGGG---UGGGC----GUGA--------------GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 23898 | 0.66 | 0.71285 |
Target: 5'- gGGugUCgaggUAUUCCUCGa-CGCGCUCCCa -3' miRNA: 3'- -CUugAG----GUAAGGGGUggGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 75625 | 0.66 | 0.711811 |
Target: 5'- --uCUCCAccaccguUUCCCCGcaaacCCCGCACUUg- -3' miRNA: 3'- cuuGAGGU-------AAGGGGU-----GGGCGUGAGgg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 21523 | 0.67 | 0.702425 |
Target: 5'- uGGGCgCUAUUCguugaCCACCCGCGCgguggCCUc -3' miRNA: 3'- -CUUGaGGUAAGg----GGUGGGCGUGa----GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 69112 | 0.67 | 0.701379 |
Target: 5'- aAGCgCCg--CCUCGCCCGCGCccuggccUCCCu -3' miRNA: 3'- cUUGaGGuaaGGGGUGGGCGUG-------AGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 41229 | 0.67 | 0.681393 |
Target: 5'- -uGCUCCAgcggUCCCgAUCUGCgucgguccacuGCUCCUc -3' miRNA: 3'- cuUGAGGUa---AGGGgUGGGCG-----------UGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 17958 | 0.67 | 0.670805 |
Target: 5'- cGGCUCCGUgggCCaCCgcaGCCCaugcggcCACUCCCg -3' miRNA: 3'- cUUGAGGUAa--GG-GG---UGGGc------GUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 38588 | 0.67 | 0.660184 |
Target: 5'- uGGACgaUCCAUUgUCgGCUCGCACUCUUc -3' miRNA: 3'- -CUUG--AGGUAAgGGgUGGGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 35895 | 0.67 | 0.660184 |
Target: 5'- cGGGCUCCAUccucgaaUCCCGCCCGaUACgCCUu -3' miRNA: 3'- -CUUGAGGUAa------GGGGUGGGC-GUGaGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 51655 | 0.67 | 0.660184 |
Target: 5'- --cCUCCGacgucaUCCCCACCC-CAUggCCCg -3' miRNA: 3'- cuuGAGGUa-----AGGGGUGGGcGUGa-GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 12191 | 0.67 | 0.649538 |
Target: 5'- cGGAC-CCGgcgucgggcUUCCCCGCgcgCCGCAUcCCCg -3' miRNA: 3'- -CUUGaGGU---------AAGGGGUG---GGCGUGaGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 74391 | 0.67 | 0.649538 |
Target: 5'- gGGACUUgAUgaCCCCGCCCGCgGCgCCa -3' miRNA: 3'- -CUUGAGgUAa-GGGGUGGGCG-UGaGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 59348 | 0.68 | 0.617547 |
Target: 5'- gGAGCcCUAgucacuggCCCCACCCucuGCUCCCg -3' miRNA: 3'- -CUUGaGGUaa------GGGGUGGGcg-UGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 34166 | 0.68 | 0.606895 |
Target: 5'- cGACaaagCCGaaggCCCCGCCUGagACUCCCa -3' miRNA: 3'- cUUGa---GGUaa--GGGGUGGGCg-UGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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