miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18378 5' -56.5 NC_004681.1 + 37632 0.69 0.575096
Target:  5'- --uCUCCAgcUCCUC-CUCGCGCUCCg -3'
miRNA:   3'- cuuGAGGUa-AGGGGuGGGCGUGAGGg -5'
18378 5' -56.5 NC_004681.1 + 19570 0.69 0.564574
Target:  5'- -cGCUucCCGUUCCCCgcACCCGCGgUCa- -3'
miRNA:   3'- cuUGA--GGUAAGGGG--UGGGCGUgAGgg -5'
18378 5' -56.5 NC_004681.1 + 29296 0.7 0.512867
Target:  5'- uGGACUCCcgUCaacuCCACUCGCACcaaccUCCUc -3'
miRNA:   3'- -CUUGAGGuaAGg---GGUGGGCGUG-----AGGG- -5'
18378 5' -56.5 NC_004681.1 + 39599 0.7 0.492722
Target:  5'- cGAgUUCAUagCCuCUGCCCGCACUCUCa -3'
miRNA:   3'- cUUgAGGUAa-GG-GGUGGGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 13107 0.7 0.472948
Target:  5'- -cAUUCCGUUaacaCCCGCCC-CGCUgCCCg -3'
miRNA:   3'- cuUGAGGUAAg---GGGUGGGcGUGA-GGG- -5'
18378 5' -56.5 NC_004681.1 + 23040 0.71 0.453582
Target:  5'- cGGAC-CCGUcaauccacaacgUCCCCGCCCGCAaUCgCg -3'
miRNA:   3'- -CUUGaGGUA------------AGGGGUGGGCGUgAGgG- -5'
18378 5' -56.5 NC_004681.1 + 42319 0.72 0.397333
Target:  5'- aAGCUCaccaUCCCCGCCCacgcgcaGCGCUCCa -3'
miRNA:   3'- cUUGAGgua-AGGGGUGGG-------CGUGAGGg -5'
18378 5' -56.5 NC_004681.1 + 10896 0.73 0.363802
Target:  5'- cAGCUCCAggcgcgUCgCCACCuCGUGCUCCa -3'
miRNA:   3'- cUUGAGGUa-----AGgGGUGG-GCGUGAGGg -5'
18378 5' -56.5 NC_004681.1 + 13246 0.75 0.273374
Target:  5'- --uCUCCugcUUCUCCGCCucggCGCGCUCCCg -3'
miRNA:   3'- cuuGAGGu--AAGGGGUGG----GCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 26659 0.76 0.241372
Target:  5'- uGAGCUCCAggauUUCCCUguACUCGCugUCgCCg -3'
miRNA:   3'- -CUUGAGGU----AAGGGG--UGGGCGugAG-GG- -5'
18378 5' -56.5 NC_004681.1 + 10930 1.12 0.000724
Target:  5'- gGAACUCCAUUCCCCACCCGCACUCCCg -3'
miRNA:   3'- -CUUGAGGUAAGGGGUGGGCGUGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.