miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18378 5' -56.5 NC_004681.1 + 12191 0.67 0.649538
Target:  5'- cGGAC-CCGgcgucgggcUUCCCCGCgcgCCGCAUcCCCg -3'
miRNA:   3'- -CUUGaGGU---------AAGGGGUG---GGCGUGaGGG- -5'
18378 5' -56.5 NC_004681.1 + 11877 0.66 0.740594
Target:  5'- gGAAUUCCAaUCCCCuauACCCGggacCACUggggauaucgagcgCCCg -3'
miRNA:   3'- -CUUGAGGUaAGGGG---UGGGC----GUGA--------------GGG- -5'
18378 5' -56.5 NC_004681.1 + 23898 0.66 0.71285
Target:  5'- gGGugUCgaggUAUUCCUCGa-CGCGCUCCCa -3'
miRNA:   3'- -CUugAG----GUAAGGGGUggGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 75625 0.66 0.711811
Target:  5'- --uCUCCAccaccguUUCCCCGcaaacCCCGCACUUg- -3'
miRNA:   3'- cuuGAGGU-------AAGGGGU-----GGGCGUGAGgg -5'
18378 5' -56.5 NC_004681.1 + 38588 0.67 0.660184
Target:  5'- uGGACgaUCCAUUgUCgGCUCGCACUCUUc -3'
miRNA:   3'- -CUUG--AGGUAAgGGgUGGGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 74391 0.67 0.649538
Target:  5'- gGGACUUgAUgaCCCCGCCCGCgGCgCCa -3'
miRNA:   3'- -CUUGAGgUAa-GGGGUGGGCG-UGaGGg -5'
18378 5' -56.5 NC_004681.1 + 39599 0.7 0.492722
Target:  5'- cGAgUUCAUagCCuCUGCCCGCACUCUCa -3'
miRNA:   3'- cUUgAGGUAa-GG-GGUGGGCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 10896 0.73 0.363802
Target:  5'- cAGCUCCAggcgcgUCgCCACCuCGUGCUCCa -3'
miRNA:   3'- cUUGAGGUa-----AGgGGUGG-GCGUGAGGg -5'
18378 5' -56.5 NC_004681.1 + 13246 0.75 0.273374
Target:  5'- --uCUCCugcUUCUCCGCCucggCGCGCUCCCg -3'
miRNA:   3'- cuuGAGGu--AAGGGGUGG----GCGUGAGGG- -5'
18378 5' -56.5 NC_004681.1 + 26659 0.76 0.241372
Target:  5'- uGAGCUCCAggauUUCCCUguACUCGCugUCgCCg -3'
miRNA:   3'- -CUUGAGGU----AAGGGG--UGGGCGugAG-GG- -5'
18378 5' -56.5 NC_004681.1 + 70745 0.66 0.763645
Target:  5'- --cCUCCAcuugguggUUCUCCACgCGCACaUCgCCg -3'
miRNA:   3'- cuuGAGGU--------AAGGGGUGgGCGUG-AG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.