Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18378 | 5' | -56.5 | NC_004681.1 | + | 26659 | 0.76 | 0.241372 |
Target: 5'- uGAGCUCCAggauUUCCCUguACUCGCugUCgCCg -3' miRNA: 3'- -CUUGAGGU----AAGGGG--UGGGCGugAG-GG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 74391 | 0.67 | 0.649538 |
Target: 5'- gGGACUUgAUgaCCCCGCCCGCgGCgCCa -3' miRNA: 3'- -CUUGAGgUAa-GGGGUGGGCG-UGaGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 38588 | 0.67 | 0.660184 |
Target: 5'- uGGACgaUCCAUUgUCgGCUCGCACUCUUc -3' miRNA: 3'- -CUUG--AGGUAAgGGgUGGGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 75625 | 0.66 | 0.711811 |
Target: 5'- --uCUCCAccaccguUUCCCCGcaaacCCCGCACUUg- -3' miRNA: 3'- cuuGAGGU-------AAGGGGU-----GGGCGUGAGgg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 39599 | 0.7 | 0.492722 |
Target: 5'- cGAgUUCAUagCCuCUGCCCGCACUCUCa -3' miRNA: 3'- cUUgAGGUAa-GG-GGUGGGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 23898 | 0.66 | 0.71285 |
Target: 5'- gGGugUCgaggUAUUCCUCGa-CGCGCUCCCa -3' miRNA: 3'- -CUugAG----GUAAGGGGUggGCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 11877 | 0.66 | 0.740594 |
Target: 5'- gGAAUUCCAaUCCCCuauACCCGggacCACUggggauaucgagcgCCCg -3' miRNA: 3'- -CUUGAGGUaAGGGG---UGGGC----GUGA--------------GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 70745 | 0.66 | 0.763645 |
Target: 5'- --cCUCCAcuugguggUUCUCCACgCGCACaUCgCCg -3' miRNA: 3'- cuuGAGGU--------AAGGGGUGgGCGUG-AG-GG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 10896 | 0.73 | 0.363802 |
Target: 5'- cAGCUCCAggcgcgUCgCCACCuCGUGCUCCa -3' miRNA: 3'- cUUGAGGUa-----AGgGGUGG-GCGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 13246 | 0.75 | 0.273374 |
Target: 5'- --uCUCCugcUUCUCCGCCucggCGCGCUCCCg -3' miRNA: 3'- cuuGAGGu--AAGGGGUGG----GCGUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 46611 | 0.66 | 0.763645 |
Target: 5'- -cACUCgccgaGgaCCCCGcCCCGCACacgCCCa -3' miRNA: 3'- cuUGAGg----UaaGGGGU-GGGCGUGa--GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 69112 | 0.67 | 0.701379 |
Target: 5'- aAGCgCCg--CCUCGCCCGCGCccuggccUCCCu -3' miRNA: 3'- cUUGaGGuaaGGGGUGGGCGUG-------AGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 41229 | 0.67 | 0.681393 |
Target: 5'- -uGCUCCAgcggUCCCgAUCUGCgucgguccacuGCUCCUc -3' miRNA: 3'- cuUGAGGUa---AGGGgUGGGCG-----------UGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 17958 | 0.67 | 0.670805 |
Target: 5'- cGGCUCCGUgggCCaCCgcaGCCCaugcggcCACUCCCg -3' miRNA: 3'- cUUGAGGUAa--GG-GG---UGGGc------GUGAGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 51655 | 0.67 | 0.660184 |
Target: 5'- --cCUCCGacgucaUCCCCACCC-CAUggCCCg -3' miRNA: 3'- cuuGAGGUa-----AGGGGUGGGcGUGa-GGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 35895 | 0.67 | 0.660184 |
Target: 5'- cGGGCUCCAUccucgaaUCCCGCCCGaUACgCCUu -3' miRNA: 3'- -CUUGAGGUAa------GGGGUGGGC-GUGaGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 12191 | 0.67 | 0.649538 |
Target: 5'- cGGAC-CCGgcgucgggcUUCCCCGCgcgCCGCAUcCCCg -3' miRNA: 3'- -CUUGaGGU---------AAGGGGUG---GGCGUGaGGG- -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 37632 | 0.69 | 0.575096 |
Target: 5'- --uCUCCAgcUCCUC-CUCGCGCUCCg -3' miRNA: 3'- cuuGAGGUa-AGGGGuGGGCGUGAGGg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 19570 | 0.69 | 0.564574 |
Target: 5'- -cGCUucCCGUUCCCCgcACCCGCGgUCa- -3' miRNA: 3'- cuUGA--GGUAAGGGG--UGGGCGUgAGgg -5' |
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18378 | 5' | -56.5 | NC_004681.1 | + | 23040 | 0.71 | 0.453582 |
Target: 5'- cGGAC-CCGUcaauccacaacgUCCCCGCCCGCAaUCgCg -3' miRNA: 3'- -CUUGaGGUA------------AGGGGUGGGCGUgAGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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