miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18379 3' -54.2 NC_004681.1 + 54612 0.66 0.865899
Target:  5'- cCGAgGUccuuuaGGGUCuGC-UCCGCcaGAGUGGCg -3'
miRNA:   3'- -GUUgCG------CCUAG-CGuAGGCG--UUCACCG- -5'
18379 3' -54.2 NC_004681.1 + 31821 0.66 0.865899
Target:  5'- cCAGCGCuuggUGCAuuuUCCGCA-GUGGUg -3'
miRNA:   3'- -GUUGCGccuaGCGU---AGGCGUuCACCG- -5'
18379 3' -54.2 NC_004681.1 + 14384 0.66 0.857846
Target:  5'- --cCGCGGAgaacCGCAUCgccgacgccaagCGCAAGcaGGCg -3'
miRNA:   3'- guuGCGCCUa---GCGUAG------------GCGUUCa-CCG- -5'
18379 3' -54.2 NC_004681.1 + 4090 0.66 0.849565
Target:  5'- -cGCGCuGGGUCGCuuccUCuCGUggGaGGCa -3'
miRNA:   3'- guUGCG-CCUAGCGu---AG-GCGuuCaCCG- -5'
18379 3' -54.2 NC_004681.1 + 57389 0.66 0.849565
Target:  5'- gAGCGCaGGAacaucucagCGCGcUCCGCGAuGcUGGCg -3'
miRNA:   3'- gUUGCG-CCUa--------GCGU-AGGCGUU-C-ACCG- -5'
18379 3' -54.2 NC_004681.1 + 42170 0.66 0.849565
Target:  5'- -cGCGCGGAgguUCGCcaccugcUCCGUGAGgaaGGUg -3'
miRNA:   3'- guUGCGCCU---AGCGu------AGGCGUUCa--CCG- -5'
18379 3' -54.2 NC_004681.1 + 34234 0.66 0.849565
Target:  5'- uCGugGCGGAggaguucguucaUCGcCGUgCGCugccugcgGGGUGGCg -3'
miRNA:   3'- -GUugCGCCU------------AGC-GUAgGCG--------UUCACCG- -5'
18379 3' -54.2 NC_004681.1 + 45575 0.66 0.841063
Target:  5'- ---gGUGGAcaUCGC--CCGCAAgGUGGCc -3'
miRNA:   3'- guugCGCCU--AGCGuaGGCGUU-CACCG- -5'
18379 3' -54.2 NC_004681.1 + 36376 0.66 0.823429
Target:  5'- gCAcCGCGGAggugugUCGCAgCCgguGCGGGUGGa -3'
miRNA:   3'- -GUuGCGCCU------AGCGUaGG---CGUUCACCg -5'
18379 3' -54.2 NC_004681.1 + 11298 0.67 0.814315
Target:  5'- gGACugGUGGAUCGgGUCUGCccauGGgGGCa -3'
miRNA:   3'- gUUG--CGCCUAGCgUAGGCGu---UCaCCG- -5'
18379 3' -54.2 NC_004681.1 + 60186 0.67 0.802192
Target:  5'- gAGCGCGagguGAUCgGCAcccgCCGCGcggggaucacgccuAGUGGCg -3'
miRNA:   3'- gUUGCGC----CUAG-CGUa---GGCGU--------------UCACCG- -5'
18379 3' -54.2 NC_004681.1 + 28017 0.67 0.795541
Target:  5'- -cACGCGGugacgaGCAUCCacCAGGUGGg -3'
miRNA:   3'- guUGCGCCuag---CGUAGGc-GUUCACCg -5'
18379 3' -54.2 NC_004681.1 + 50894 0.67 0.795541
Target:  5'- uGAUGCGGGgccgucgaagUCGacgCCGCGcagaagGGUGGCa -3'
miRNA:   3'- gUUGCGCCU----------AGCguaGGCGU------UCACCG- -5'
18379 3' -54.2 NC_004681.1 + 63663 0.67 0.785901
Target:  5'- ---aGCGGAaaGCGUCgaaaugaccaccUGCAAGUGGUg -3'
miRNA:   3'- guugCGCCUagCGUAG------------GCGUUCACCG- -5'
18379 3' -54.2 NC_004681.1 + 32501 0.67 0.782978
Target:  5'- gCGACGCGGG-CGaCGUCCugaucGCGcugggugaguuccuGGUGGCc -3'
miRNA:   3'- -GUUGCGCCUaGC-GUAGG-----CGU--------------UCACCG- -5'
18379 3' -54.2 NC_004681.1 + 59354 0.67 0.776106
Target:  5'- gGGCGCGGcgcCGaguaGUCCGUggGgGGCu -3'
miRNA:   3'- gUUGCGCCua-GCg---UAGGCGuuCaCCG- -5'
18379 3' -54.2 NC_004681.1 + 24821 0.67 0.776106
Target:  5'- cCAACGCGGucgaccucAUCgGCGUCggcggCGCGGGcGGCg -3'
miRNA:   3'- -GUUGCGCC--------UAG-CGUAG-----GCGUUCaCCG- -5'
18379 3' -54.2 NC_004681.1 + 73352 0.67 0.776106
Target:  5'- -cGCGCaacaGGAUUGCcUCCGUAGGcaugagcgcaUGGCg -3'
miRNA:   3'- guUGCG----CCUAGCGuAGGCGUUC----------ACCG- -5'
18379 3' -54.2 NC_004681.1 + 29102 0.67 0.776106
Target:  5'- aCGGCGCGGuaacgAUgGCAaucaacacgguuUCCGCGucaggcGUGGCg -3'
miRNA:   3'- -GUUGCGCC-----UAgCGU------------AGGCGUu-----CACCG- -5'
18379 3' -54.2 NC_004681.1 + 12196 0.67 0.776106
Target:  5'- cCGGCGuCGGGcuuccccgCGCG-CCGCAuccccGGUGGCc -3'
miRNA:   3'- -GUUGC-GCCUa-------GCGUaGGCGU-----UCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.