miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18379 5' -57.3 NC_004681.1 + 9223 0.66 0.6943
Target:  5'- uGUGgUGAUgaaccCgCGCGACUGGGAGCUccugcgccugacgaaGGAc -3'
miRNA:   3'- -CACgACUA-----G-GCGCUGACCUUCGG---------------CCU- -5'
18379 5' -57.3 NC_004681.1 + 2654 0.66 0.658295
Target:  5'- aGUGCcgggaGGUgCGCGGCUGGAGuGCCa-- -3'
miRNA:   3'- -CACGa----CUAgGCGCUGACCUU-CGGccu -5'
18379 5' -57.3 NC_004681.1 + 50558 0.66 0.656165
Target:  5'- -cGCUGAagCUGUGGCUGGcgaaacccaacGCCGGGg -3'
miRNA:   3'- caCGACUa-GGCGCUGACCuu---------CGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 60520 0.67 0.635901
Target:  5'- aUGUUu-UCCGCGAgCUGGGagcucucguacauGGCCGGGa -3'
miRNA:   3'- cACGAcuAGGCGCU-GACCU-------------UCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 56908 0.67 0.615625
Target:  5'- cUGCgcucCCGCGAC-GGGAGCCuGGGg -3'
miRNA:   3'- cACGacuaGGCGCUGaCCUUCGG-CCU- -5'
18379 5' -57.3 NC_004681.1 + 35935 0.67 0.615625
Target:  5'- -gGCUGG-CCGCGcGCUGGggGUCu-- -3'
miRNA:   3'- caCGACUaGGCGC-UGACCuuCGGccu -5'
18379 5' -57.3 NC_004681.1 + 16611 0.67 0.615625
Target:  5'- -cGUUGAggagCUGaCGuuCUGGAAGCUGGAc -3'
miRNA:   3'- caCGACUa---GGC-GCu-GACCUUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 1443 0.67 0.615625
Target:  5'- aGUGCaGAUCgaagCGCuucgaGugUGGGAGUCGGAg -3'
miRNA:   3'- -CACGaCUAG----GCG-----CugACCUUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 37468 0.67 0.604969
Target:  5'- aGUGCUug-CCGC-AUUGGcAGCCGGGa -3'
miRNA:   3'- -CACGAcuaGGCGcUGACCuUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 73929 0.67 0.594335
Target:  5'- -aGCUGGUugaguugcCCGCauGCcGGAAGCCGGGu -3'
miRNA:   3'- caCGACUA--------GGCGc-UGaCCUUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 12388 0.68 0.583731
Target:  5'- --cUUGAUCCGgccgaGGCUGGAAGCCuGGu -3'
miRNA:   3'- cacGACUAGGCg----CUGACCUUCGG-CCu -5'
18379 5' -57.3 NC_004681.1 + 11511 0.68 0.562645
Target:  5'- -aGCU--UCCGUGGaUGGAAGUCGGGg -3'
miRNA:   3'- caCGAcuAGGCGCUgACCUUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 51724 0.68 0.562645
Target:  5'- -cGUUGAaggcgUCCGCcaGGCUGGc-GCCGGAa -3'
miRNA:   3'- caCGACU-----AGGCG--CUGACCuuCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 52765 0.68 0.541768
Target:  5'- cUGCUGGUCCugcgcGCGAUUGcGGGCgGGGa -3'
miRNA:   3'- cACGACUAGG-----CGCUGACcUUCGgCCU- -5'
18379 5' -57.3 NC_004681.1 + 9646 0.69 0.471088
Target:  5'- -aGCUGAcgUUCGUGA--GGggGCCGGGu -3'
miRNA:   3'- caCGACU--AGGCGCUgaCCuuCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 45528 0.71 0.405392
Target:  5'- -gGCgacGA-CgGCGGCUGGAAGUCGGGc -3'
miRNA:   3'- caCGa--CUaGgCGCUGACCUUCGGCCU- -5'
18379 5' -57.3 NC_004681.1 + 11662 1.08 0.001044
Target:  5'- gGUGCUGAUCCGCGACUGGAAGCCGGAu -3'
miRNA:   3'- -CACGACUAGGCGCUGACCUUCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.