miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 47877 0.66 0.864606
Target:  5'- uGCgGAC-GUGACUUGggGuGACAUCCg -3'
miRNA:   3'- gUGaCUGcCGUUGGACuuC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 32168 0.66 0.864606
Target:  5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3'
miRNA:   3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5'
18380 3' -54 NC_004681.1 + 35055 0.66 0.864606
Target:  5'- cCGCgGACGGCAACCacagUGGcAGGcucgguGCGCUCc -3'
miRNA:   3'- -GUGaCUGCCGUUGG----ACU-UCC------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 18186 0.66 0.864606
Target:  5'- -cCUGGCGGU--CCUGGAGcGccucccggcGCACCCc -3'
miRNA:   3'- guGACUGCCGuuGGACUUC-C---------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 62045 0.66 0.856511
Target:  5'- gCGCcggGACGaCAGCUUGggGG-CGCCg -3'
miRNA:   3'- -GUGa--CUGCcGUUGGACuuCCuGUGGg -5'
18380 3' -54 NC_004681.1 + 57716 0.66 0.856511
Target:  5'- -cCUGACccGguGCCUGGccgGGGGCGCCg -3'
miRNA:   3'- guGACUGc-CguUGGACU---UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 21100 0.66 0.856511
Target:  5'- aGC-GACGGCAAUCcGcuGGACACgCu -3'
miRNA:   3'- gUGaCUGCCGUUGGaCuuCCUGUGgG- -5'
18380 3' -54 NC_004681.1 + 44647 0.66 0.856511
Target:  5'- aCACcGACuGCAccgugcagGCC--AAGGACACCCu -3'
miRNA:   3'- -GUGaCUGcCGU--------UGGacUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 52973 0.66 0.856511
Target:  5'- gGCUGGCGGCAAgUUUGAcGGcUACuCCa -3'
miRNA:   3'- gUGACUGCCGUU-GGACUuCCuGUG-GG- -5'
18380 3' -54 NC_004681.1 + 39480 0.66 0.856511
Target:  5'- gCGCUGGCucaaggccgguGGCAGCgaGGcGGGACucaugGCCCa -3'
miRNA:   3'- -GUGACUG-----------CCGUUGgaCU-UCCUG-----UGGG- -5'
18380 3' -54 NC_004681.1 + 9219 0.66 0.851543
Target:  5'- aCGCUGugGugaugaacccgcGCGacugggagcuccugcGCCUGAcgaAGGACGCCa -3'
miRNA:   3'- -GUGACugC------------CGU---------------UGGACU---UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 18391 0.66 0.848187
Target:  5'- ---aGGCGGCGGCCgcGgcGGcaaacgccuucGCACCCg -3'
miRNA:   3'- gugaCUGCCGUUGGa-CuuCC-----------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 67319 0.66 0.848187
Target:  5'- cCGCgggGGCGGUcucACCguccgcGAAGG-CGCCCa -3'
miRNA:   3'- -GUGa--CUGCCGu--UGGa-----CUUCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 62930 0.66 0.848187
Target:  5'- gGCUGGuCGGCAcgaaGCCggugugGGuguGGuCACCCg -3'
miRNA:   3'- gUGACU-GCCGU----UGGa-----CUu--CCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 35456 0.66 0.848187
Target:  5'- aCGCUGGCGGUGccGCucuugCUGgcGGuguuCACCCu -3'
miRNA:   3'- -GUGACUGCCGU--UG-----GACuuCCu---GUGGG- -5'
18380 3' -54 NC_004681.1 + 72863 0.66 0.848187
Target:  5'- cCACgcgcGCGGCAACUUGAuccggguGGACAUUg -3'
miRNA:   3'- -GUGac--UGCCGUUGGACUu------CCUGUGGg -5'
18380 3' -54 NC_004681.1 + 66636 0.66 0.847342
Target:  5'- uCGCUcugGACGGCGcUCUGGgcaucggGGGGUACCCg -3'
miRNA:   3'- -GUGA---CUGCCGUuGGACU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 7057 0.66 0.839643
Target:  5'- aACgaccGCGGC-GCCaUGAAGGacgGCACCCc -3'
miRNA:   3'- gUGac--UGCCGuUGG-ACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 10714 0.67 0.830888
Target:  5'- gUugUGGCGGCcguaCUucAGGGCGCCUu -3'
miRNA:   3'- -GugACUGCCGuug-GAcuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 13431 0.67 0.830888
Target:  5'- aGCUGuucgaugagaACGGCgAGCCgaUGAAGGAC-CUCg -3'
miRNA:   3'- gUGAC----------UGCCG-UUGG--ACUUCCUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.