Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 15192 | 0.67 | 0.812777 |
Target: 5'- gCGCUGuCcaaGCAG-CUGAAGGAC-CCCa -3' miRNA: 3'- -GUGACuGc--CGUUgGACUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 67212 | 0.67 | 0.812777 |
Target: 5'- gGCUGuCGGCAACC------GCACCCg -3' miRNA: 3'- gUGACuGCCGUUGGacuuccUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19633 | 0.67 | 0.821929 |
Target: 5'- gGCgaggGugGGCaAGCCUGGgacggcAGcGGCAUCCg -3' miRNA: 3'- gUGa---CugCCG-UUGGACU------UC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 22413 | 0.67 | 0.825536 |
Target: 5'- cCGCgGACGGCAACCcuccgcacuACACCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGacuucc---UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 13431 | 0.67 | 0.830888 |
Target: 5'- aGCUGuucgaugagaACGGCgAGCCgaUGAAGGAC-CUCg -3' miRNA: 3'- gUGAC----------UGCCG-UUGG--ACUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 50295 | 0.67 | 0.830888 |
Target: 5'- cCACguccccGCGGcCGACgCUGAAcucauGGGCACCCc -3' miRNA: 3'- -GUGac----UGCC-GUUG-GACUU-----CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17303 | 0.67 | 0.803441 |
Target: 5'- uGCUGGCGcGCGuGCCcGcGGGACGCUa -3' miRNA: 3'- gUGACUGC-CGU-UGGaCuUCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24851 | 0.67 | 0.793931 |
Target: 5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 368 | 0.67 | 0.784257 |
Target: 5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3' miRNA: 3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19073 | 0.67 | 0.784257 |
Target: 5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3' miRNA: 3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 10714 | 0.67 | 0.830888 |
Target: 5'- gUugUGGCGGCcguaCUucAGGGCGCCUu -3' miRNA: 3'- -GugACUGCCGuug-GAcuUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17183 | 0.67 | 0.803441 |
Target: 5'- cCGC-GGCgcaGGCGGCCgUGGcgcAGGACACCUu -3' miRNA: 3'- -GUGaCUG---CCGUUGG-ACU---UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 16156 | 0.67 | 0.792971 |
Target: 5'- gGCgUGGCGGCGcuGCCauguuggcUGGAagcccaccgcuucGGACGCCCg -3' miRNA: 3'- gUG-ACUGCCGU--UGG--------ACUU-------------CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35935 | 0.67 | 0.803441 |
Target: 5'- gGCUGGCcGC-GCgCUGggGGucucCGCCCg -3' miRNA: 3'- gUGACUGcCGuUG-GACuuCCu---GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 34047 | 0.67 | 0.782304 |
Target: 5'- cCACUG-CGGCGcgaaggccgucgaACCUGGAGGcguGCAggagguuCCCg -3' miRNA: 3'- -GUGACuGCCGU-------------UGGACUUCC---UGU-------GGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 56916 | 0.68 | 0.744135 |
Target: 5'- cCGC-GACGGgAGCCUG-GGGACcgGCCa -3' miRNA: 3'- -GUGaCUGCCgUUGGACuUCCUG--UGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 63094 | 0.68 | 0.748238 |
Target: 5'- uCGCUGGCGGUAugggugugguccucaGCCgucucAGuGGCACCCu -3' miRNA: 3'- -GUGACUGCCGU---------------UGGacu--UC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39019 | 0.68 | 0.774429 |
Target: 5'- cCACggcccGCGGCGACaaaGAGGACugCCu -3' miRNA: 3'- -GUGac---UGCCGUUGgacUUCCUGugGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 16787 | 0.68 | 0.77443 |
Target: 5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3' miRNA: 3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 62014 | 0.68 | 0.77443 |
Target: 5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3' miRNA: 3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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