Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 22106 | 0.68 | 0.737947 |
Target: 5'- gCACUccggugagGAUGGCGACgaGGucggcgacggucauGGACACCCa -3' miRNA: 3'- -GUGA--------CUGCCGUUGgaCUu-------------CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19439 | 0.68 | 0.757401 |
Target: 5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3' miRNA: 3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 49075 | 0.68 | 0.76446 |
Target: 5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3' miRNA: 3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 62014 | 0.68 | 0.77443 |
Target: 5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3' miRNA: 3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 16787 | 0.68 | 0.77443 |
Target: 5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3' miRNA: 3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32652 | 0.68 | 0.758413 |
Target: 5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3' miRNA: 3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 11682 | 0.68 | 0.77443 |
Target: 5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3' miRNA: 3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39355 | 0.68 | 0.76446 |
Target: 5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3' miRNA: 3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 6828 | 0.68 | 0.76446 |
Target: 5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3' miRNA: 3'- gugACUGCCGU---UGGACUUccUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17342 | 0.68 | 0.76446 |
Target: 5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3' miRNA: 3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 69019 | 0.68 | 0.76446 |
Target: 5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3' miRNA: 3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17270 | 0.69 | 0.723369 |
Target: 5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3' miRNA: 3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 23855 | 0.69 | 0.702252 |
Target: 5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3' miRNA: 3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 48759 | 0.69 | 0.712849 |
Target: 5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3' miRNA: 3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 5249 | 0.7 | 0.615965 |
Target: 5'- cCGCUGugGGCAugCaGuuGGAgCGCCa -3' miRNA: 3'- -GUGACugCCGUugGaCuuCCU-GUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 60608 | 0.7 | 0.658225 |
Target: 5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3' miRNA: 3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 14777 | 0.7 | 0.659307 |
Target: 5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3' miRNA: 3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 41734 | 0.7 | 0.626803 |
Target: 5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3' miRNA: 3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 55163 | 0.7 | 0.626803 |
Target: 5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3' miRNA: 3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 6944 | 0.7 | 0.670106 |
Target: 5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3' miRNA: 3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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