Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 8486 | 0.71 | 0.572836 |
Target: 5'- gGCUG-CGGCuGAgCUGAuGGGCGCCUu -3' miRNA: 3'- gUGACuGCCG-UUgGACUuCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24349 | 0.71 | 0.563218 |
Target: 5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3' miRNA: 3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24105 | 0.72 | 0.499433 |
Target: 5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3' miRNA: 3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 55811 | 0.72 | 0.530455 |
Target: 5'- uGCUGACGGUcgauGACCUcAAGG-CGCUCg -3' miRNA: 3'- gUGACUGCCG----UUGGAcUUCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 15872 | 0.72 | 0.540954 |
Target: 5'- gACUGugGGgAGCCUGGcggccgcguGGGuCACCg -3' miRNA: 3'- gUGACugCCgUUGGACU---------UCCuGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35781 | 0.72 | 0.518993 |
Target: 5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3' miRNA: 3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 52757 | 0.72 | 0.520031 |
Target: 5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3' miRNA: 3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 28370 | 0.73 | 0.469243 |
Target: 5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3' miRNA: 3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 75244 | 0.74 | 0.440014 |
Target: 5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3' miRNA: 3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 48664 | 0.75 | 0.376087 |
Target: 5'- aCGCUGGCGGgAAcCCUGgcGGGCcagcuCCCa -3' miRNA: 3'- -GUGACUGCCgUU-GGACuuCCUGu----GGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 61526 | 0.76 | 0.326508 |
Target: 5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3' miRNA: 3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 12650 | 0.77 | 0.268199 |
Target: 5'- gGCUGACGGCGug--GAugGGGGCACCCc -3' miRNA: 3'- gUGACUGCCGUuggaCU--UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 66840 | 0.78 | 0.24234 |
Target: 5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3' miRNA: 3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 38836 | 0.78 | 0.261533 |
Target: 5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3' miRNA: 3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 61896 | 0.82 | 0.146594 |
Target: 5'- cCACUGAUGGCGGCCUGAucGGCACg- -3' miRNA: 3'- -GUGACUGCCGUUGGACUucCUGUGgg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 6637 | 0.82 | 0.150223 |
Target: 5'- aACUGGCGGagaaguaccccgaCGACCUGGAGGACAUCUu -3' miRNA: 3'- gUGACUGCC-------------GUUGGACUUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 11727 | 1.12 | 0.001337 |
Target: 5'- cCACUGACGGCAACCUGAAGGACACCCu -3' miRNA: 3'- -GUGACUGCCGUUGGACUUCCUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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