Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 62930 | 0.66 | 0.848187 |
Target: 5'- gGCUGGuCGGCAcgaaGCCggugugGGuguGGuCACCCg -3' miRNA: 3'- gUGACU-GCCGU----UGGa-----CUu--CCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 67319 | 0.66 | 0.848187 |
Target: 5'- cCGCgggGGCGGUcucACCguccgcGAAGG-CGCCCa -3' miRNA: 3'- -GUGa--CUGCCGu--UGGa-----CUUCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 57716 | 0.66 | 0.856511 |
Target: 5'- -cCUGACccGguGCCUGGccgGGGGCGCCg -3' miRNA: 3'- guGACUGc-CguUGGACU---UCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 62045 | 0.66 | 0.856511 |
Target: 5'- gCGCcggGACGaCAGCUUGggGG-CGCCg -3' miRNA: 3'- -GUGa--CUGCcGUUGGACuuCCuGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 44647 | 0.66 | 0.856511 |
Target: 5'- aCACcGACuGCAccgugcagGCC--AAGGACACCCu -3' miRNA: 3'- -GUGaCUGcCGU--------UGGacUUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 47877 | 0.66 | 0.864606 |
Target: 5'- uGCgGAC-GUGACUUGggGuGACAUCCg -3' miRNA: 3'- gUGaCUGcCGUUGGACuuC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 18186 | 0.66 | 0.864606 |
Target: 5'- -cCUGGCGGU--CCUGGAGcGccucccggcGCACCCc -3' miRNA: 3'- guGACUGCCGuuGGACUUC-C---------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35055 | 0.66 | 0.864606 |
Target: 5'- cCGCgGACGGCAACCacagUGGcAGGcucgguGCGCUCc -3' miRNA: 3'- -GUGaCUGCCGUUGG----ACU-UCC------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 21100 | 0.66 | 0.856511 |
Target: 5'- aGC-GACGGCAAUCcGcuGGACACgCu -3' miRNA: 3'- gUGaCUGCCGUUGGaCuuCCUGUGgG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 52973 | 0.66 | 0.856511 |
Target: 5'- gGCUGGCGGCAAgUUUGAcGGcUACuCCa -3' miRNA: 3'- gUGACUGCCGUU-GGACUuCCuGUG-GG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39480 | 0.66 | 0.856511 |
Target: 5'- gCGCUGGCucaaggccgguGGCAGCgaGGcGGGACucaugGCCCa -3' miRNA: 3'- -GUGACUG-----------CCGUUGgaCU-UCCUG-----UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 9219 | 0.66 | 0.851543 |
Target: 5'- aCGCUGugGugaugaacccgcGCGacugggagcuccugcGCCUGAcgaAGGACGCCa -3' miRNA: 3'- -GUGACugC------------CGU---------------UGGACU---UCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 72863 | 0.66 | 0.848187 |
Target: 5'- cCACgcgcGCGGCAACUUGAuccggguGGACAUUg -3' miRNA: 3'- -GUGac--UGCCGUUGGACUu------CCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 18391 | 0.66 | 0.848187 |
Target: 5'- ---aGGCGGCGGCCgcGgcGGcaaacgccuucGCACCCg -3' miRNA: 3'- gugaCUGCCGUUGGa-CuuCC-----------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 66636 | 0.66 | 0.847342 |
Target: 5'- uCGCUcugGACGGCGcUCUGGgcaucggGGGGUACCCg -3' miRNA: 3'- -GUGA---CUGCCGUuGGACU-------UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 7057 | 0.66 | 0.839643 |
Target: 5'- aACgaccGCGGC-GCCaUGAAGGacgGCACCCc -3' miRNA: 3'- gUGac--UGCCGuUGG-ACUUCC---UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32168 | 0.66 | 0.864606 |
Target: 5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3' miRNA: 3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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