miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 50295 0.67 0.830888
Target:  5'- cCACguccccGCGGcCGACgCUGAAcucauGGGCACCCc -3'
miRNA:   3'- -GUGac----UGCC-GUUG-GACUU-----CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 22413 0.67 0.825536
Target:  5'- cCGCgGACGGCAACCcuccgcacuACACCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGacuucc---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 19633 0.67 0.821929
Target:  5'- gGCgaggGugGGCaAGCCUGGgacggcAGcGGCAUCCg -3'
miRNA:   3'- gUGa---CugCCG-UUGGACU------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 67212 0.67 0.812777
Target:  5'- gGCUGuCGGCAACC------GCACCCg -3'
miRNA:   3'- gUGACuGCCGUUGGacuuccUGUGGG- -5'
18380 3' -54 NC_004681.1 + 15192 0.67 0.812777
Target:  5'- gCGCUGuCcaaGCAG-CUGAAGGAC-CCCa -3'
miRNA:   3'- -GUGACuGc--CGUUgGACUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 17303 0.67 0.803441
Target:  5'- uGCUGGCGcGCGuGCCcGcGGGACGCUa -3'
miRNA:   3'- gUGACUGC-CGU-UGGaCuUCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 17183 0.67 0.803441
Target:  5'- cCGC-GGCgcaGGCGGCCgUGGcgcAGGACACCUu -3'
miRNA:   3'- -GUGaCUG---CCGUUGG-ACU---UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 35935 0.67 0.803441
Target:  5'- gGCUGGCcGC-GCgCUGggGGucucCGCCCg -3'
miRNA:   3'- gUGACUGcCGuUG-GACuuCCu---GUGGG- -5'
18380 3' -54 NC_004681.1 + 59853 0.67 0.803441
Target:  5'- cCACcu-CGGCGACUgccGGGACAUCCu -3'
miRNA:   3'- -GUGacuGCCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 27492 0.67 0.803441
Target:  5'- cCGCUGACccUGACCUGggGcACGCCUc -3'
miRNA:   3'- -GUGACUGccGUUGGACuuCcUGUGGG- -5'
18380 3' -54 NC_004681.1 + 24851 0.67 0.793931
Target:  5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5'
18380 3' -54 NC_004681.1 + 16156 0.67 0.792971
Target:  5'- gGCgUGGCGGCGcuGCCauguuggcUGGAagcccaccgcuucGGACGCCCg -3'
miRNA:   3'- gUG-ACUGCCGU--UGG--------ACUU-------------CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 368 0.67 0.784257
Target:  5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3'
miRNA:   3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 19073 0.67 0.784257
Target:  5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3'
miRNA:   3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 34047 0.67 0.782304
Target:  5'- cCACUG-CGGCGcgaaggccgucgaACCUGGAGGcguGCAggagguuCCCg -3'
miRNA:   3'- -GUGACuGCCGU-------------UGGACUUCC---UGU-------GGG- -5'
18380 3' -54 NC_004681.1 + 11682 0.68 0.77443
Target:  5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3'
miRNA:   3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5'
18380 3' -54 NC_004681.1 + 16787 0.68 0.77443
Target:  5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3'
miRNA:   3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 62014 0.68 0.77443
Target:  5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3'
miRNA:   3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 39019 0.68 0.774429
Target:  5'- cCACggcccGCGGCGACaaaGAGGACugCCu -3'
miRNA:   3'- -GUGac---UGCCGUUGgacUUCCUGugGG- -5'
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.