miRNA display CGI


Results 41 - 60 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 17342 0.68 0.76446
Target:  5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3'
miRNA:   3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5'
18380 3' -54 NC_004681.1 + 69019 0.68 0.76446
Target:  5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3'
miRNA:   3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5'
18380 3' -54 NC_004681.1 + 6828 0.68 0.76446
Target:  5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3'
miRNA:   3'- gugACUGCCGU---UGGACUUccUGUGGg -5'
18380 3' -54 NC_004681.1 + 39355 0.68 0.76446
Target:  5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3'
miRNA:   3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5'
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 32652 0.68 0.758413
Target:  5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3'
miRNA:   3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 19439 0.68 0.757401
Target:  5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3'
miRNA:   3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 55403 0.68 0.754358
Target:  5'- uGCUgucGAUGGUcgcGCCUGAGauGGACACCg -3'
miRNA:   3'- gUGA---CUGCCGu--UGGACUU--CCUGUGGg -5'
18380 3' -54 NC_004681.1 + 63094 0.68 0.748238
Target:  5'- uCGCUGGCGGUAugggugugguccucaGCCgucucAGuGGCACCCu -3'
miRNA:   3'- -GUGACUGCCGU---------------UGGacu--UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 56916 0.68 0.744135
Target:  5'- cCGC-GACGGgAGCCUG-GGGACcgGCCa -3'
miRNA:   3'- -GUGaCUGCCgUUGGACuUCCUG--UGGg -5'
18380 3' -54 NC_004681.1 + 22106 0.68 0.737947
Target:  5'- gCACUccggugagGAUGGCGACgaGGucggcgacggucauGGACACCCa -3'
miRNA:   3'- -GUGA--------CUGCCGUUGgaCUu-------------CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 17270 0.69 0.723369
Target:  5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3'
miRNA:   3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 48759 0.69 0.712849
Target:  5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3'
miRNA:   3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 14777 0.7 0.659307
Target:  5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3'
miRNA:   3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 60608 0.7 0.658225
Target:  5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3'
miRNA:   3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 41734 0.7 0.626803
Target:  5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3'
miRNA:   3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5'
18380 3' -54 NC_004681.1 + 55163 0.7 0.626803
Target:  5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3'
miRNA:   3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 5249 0.7 0.615965
Target:  5'- cCGCUGugGGCAugCaGuuGGAgCGCCa -3'
miRNA:   3'- -GUGACugCCGUugGaCuuCCU-GUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.