miRNA display CGI


Results 61 - 77 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 8486 0.71 0.572836
Target:  5'- gGCUG-CGGCuGAgCUGAuGGGCGCCUu -3'
miRNA:   3'- gUGACuGCCG-UUgGACUuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 24349 0.71 0.563218
Target:  5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3'
miRNA:   3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 15872 0.72 0.540954
Target:  5'- gACUGugGGgAGCCUGGcggccgcguGGGuCACCg -3'
miRNA:   3'- gUGACugCCgUUGGACU---------UCCuGUGGg -5'
18380 3' -54 NC_004681.1 + 55811 0.72 0.530455
Target:  5'- uGCUGACGGUcgauGACCUcAAGG-CGCUCg -3'
miRNA:   3'- gUGACUGCCG----UUGGAcUUCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 52757 0.72 0.520031
Target:  5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3'
miRNA:   3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5'
18380 3' -54 NC_004681.1 + 35781 0.72 0.518993
Target:  5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3'
miRNA:   3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5'
18380 3' -54 NC_004681.1 + 24105 0.72 0.499433
Target:  5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3'
miRNA:   3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 28370 0.73 0.469243
Target:  5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3'
miRNA:   3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 75244 0.74 0.440014
Target:  5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3'
miRNA:   3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5'
18380 3' -54 NC_004681.1 + 48664 0.75 0.376087
Target:  5'- aCGCUGGCGGgAAcCCUGgcGGGCcagcuCCCa -3'
miRNA:   3'- -GUGACUGCCgUU-GGACuuCCUGu----GGG- -5'
18380 3' -54 NC_004681.1 + 61526 0.76 0.326508
Target:  5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3'
miRNA:   3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5'
18380 3' -54 NC_004681.1 + 12650 0.77 0.268199
Target:  5'- gGCUGACGGCGug--GAugGGGGCACCCc -3'
miRNA:   3'- gUGACUGCCGUuggaCU--UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 38836 0.78 0.261533
Target:  5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3'
miRNA:   3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5'
18380 3' -54 NC_004681.1 + 66840 0.78 0.24234
Target:  5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3'
miRNA:   3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 6637 0.82 0.150223
Target:  5'- aACUGGCGGagaaguaccccgaCGACCUGGAGGACAUCUu -3'
miRNA:   3'- gUGACUGCC-------------GUUGGACUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 61896 0.82 0.146594
Target:  5'- cCACUGAUGGCGGCCUGAucGGCACg- -3'
miRNA:   3'- -GUGACUGCCGUUGGACUucCUGUGgg -5'
18380 3' -54 NC_004681.1 + 11727 1.12 0.001337
Target:  5'- cCACUGACGGCAACCUGAAGGACACCCu -3'
miRNA:   3'- -GUGACUGCCGUUGGACUUCCUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.