Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 17270 | 0.69 | 0.723369 |
Target: 5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3' miRNA: 3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17303 | 0.67 | 0.803441 |
Target: 5'- uGCUGGCGcGCGuGCCcGcGGGACGCUa -3' miRNA: 3'- gUGACUGC-CGU-UGGaCuUCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17342 | 0.68 | 0.76446 |
Target: 5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3' miRNA: 3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 18186 | 0.66 | 0.864606 |
Target: 5'- -cCUGGCGGU--CCUGGAGcGccucccggcGCACCCc -3' miRNA: 3'- guGACUGCCGuuGGACUUC-C---------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 18391 | 0.66 | 0.848187 |
Target: 5'- ---aGGCGGCGGCCgcGgcGGcaaacgccuucGCACCCg -3' miRNA: 3'- gugaCUGCCGUUGGa-CuuCC-----------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19073 | 0.67 | 0.784257 |
Target: 5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3' miRNA: 3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19439 | 0.68 | 0.757401 |
Target: 5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3' miRNA: 3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19633 | 0.67 | 0.821929 |
Target: 5'- gGCgaggGugGGCaAGCCUGGgacggcAGcGGCAUCCg -3' miRNA: 3'- gUGa---CugCCG-UUGGACU------UC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 21100 | 0.66 | 0.856511 |
Target: 5'- aGC-GACGGCAAUCcGcuGGACACgCu -3' miRNA: 3'- gUGaCUGCCGUUGGaCuuCCUGUGgG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 22106 | 0.68 | 0.737947 |
Target: 5'- gCACUccggugagGAUGGCGACgaGGucggcgacggucauGGACACCCa -3' miRNA: 3'- -GUGA--------CUGCCGUUGgaCUu-------------CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 22413 | 0.67 | 0.825536 |
Target: 5'- cCGCgGACGGCAACCcuccgcacuACACCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGacuucc---UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 23855 | 0.69 | 0.702252 |
Target: 5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3' miRNA: 3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24105 | 0.72 | 0.499433 |
Target: 5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3' miRNA: 3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24349 | 0.71 | 0.563218 |
Target: 5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3' miRNA: 3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24851 | 0.67 | 0.793931 |
Target: 5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 27492 | 0.67 | 0.803441 |
Target: 5'- cCGCUGACccUGACCUGggGcACGCCUc -3' miRNA: 3'- -GUGACUGccGUUGGACuuCcUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 28370 | 0.73 | 0.469243 |
Target: 5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3' miRNA: 3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32168 | 0.66 | 0.864606 |
Target: 5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3' miRNA: 3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32652 | 0.68 | 0.758413 |
Target: 5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3' miRNA: 3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 34047 | 0.67 | 0.782304 |
Target: 5'- cCACUG-CGGCGcgaaggccgucgaACCUGGAGGcguGCAggagguuCCCg -3' miRNA: 3'- -GUGACuGCCGU-------------UGGACUUCC---UGU-------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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