miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 35055 0.66 0.864606
Target:  5'- cCGCgGACGGCAACCacagUGGcAGGcucgguGCGCUCc -3'
miRNA:   3'- -GUGaCUGCCGUUGG----ACU-UCC------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 35456 0.66 0.848187
Target:  5'- aCGCUGGCGGUGccGCucuugCUGgcGGuguuCACCCu -3'
miRNA:   3'- -GUGACUGCCGU--UG-----GACuuCCu---GUGGG- -5'
18380 3' -54 NC_004681.1 + 35781 0.72 0.518993
Target:  5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3'
miRNA:   3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5'
18380 3' -54 NC_004681.1 + 35935 0.67 0.803441
Target:  5'- gGCUGGCcGC-GCgCUGggGGucucCGCCCg -3'
miRNA:   3'- gUGACUGcCGuUG-GACuuCCu---GUGGG- -5'
18380 3' -54 NC_004681.1 + 38836 0.78 0.261533
Target:  5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3'
miRNA:   3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5'
18380 3' -54 NC_004681.1 + 39019 0.68 0.774429
Target:  5'- cCACggcccGCGGCGACaaaGAGGACugCCu -3'
miRNA:   3'- -GUGac---UGCCGUUGgacUUCCUGugGG- -5'
18380 3' -54 NC_004681.1 + 39355 0.68 0.76446
Target:  5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3'
miRNA:   3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5'
18380 3' -54 NC_004681.1 + 39480 0.66 0.856511
Target:  5'- gCGCUGGCucaaggccgguGGCAGCgaGGcGGGACucaugGCCCa -3'
miRNA:   3'- -GUGACUG-----------CCGUUGgaCU-UCCUG-----UGGG- -5'
18380 3' -54 NC_004681.1 + 41734 0.7 0.626803
Target:  5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3'
miRNA:   3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5'
18380 3' -54 NC_004681.1 + 44647 0.66 0.856511
Target:  5'- aCACcGACuGCAccgugcagGCC--AAGGACACCCu -3'
miRNA:   3'- -GUGaCUGcCGU--------UGGacUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 47877 0.66 0.864606
Target:  5'- uGCgGAC-GUGACUUGggGuGACAUCCg -3'
miRNA:   3'- gUGaCUGcCGUUGGACuuC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 48664 0.75 0.376087
Target:  5'- aCGCUGGCGGgAAcCCUGgcGGGCcagcuCCCa -3'
miRNA:   3'- -GUGACUGCCgUU-GGACuuCCUGu----GGG- -5'
18380 3' -54 NC_004681.1 + 48759 0.69 0.712849
Target:  5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3'
miRNA:   3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5'
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 50295 0.67 0.830888
Target:  5'- cCACguccccGCGGcCGACgCUGAAcucauGGGCACCCc -3'
miRNA:   3'- -GUGac----UGCC-GUUG-GACUU-----CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 52757 0.72 0.520031
Target:  5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3'
miRNA:   3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5'
18380 3' -54 NC_004681.1 + 52973 0.66 0.856511
Target:  5'- gGCUGGCGGCAAgUUUGAcGGcUACuCCa -3'
miRNA:   3'- gUGACUGCCGUU-GGACUuCCuGUG-GG- -5'
18380 3' -54 NC_004681.1 + 55163 0.7 0.626803
Target:  5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3'
miRNA:   3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 55403 0.68 0.754358
Target:  5'- uGCUgucGAUGGUcgcGCCUGAGauGGACACCg -3'
miRNA:   3'- gUGA---CUGCCGu--UGGACUU--CCUGUGGg -5'
18380 3' -54 NC_004681.1 + 55811 0.72 0.530455
Target:  5'- uGCUGACGGUcgauGACCUcAAGG-CGCUCg -3'
miRNA:   3'- gUGACUGCCG----UUGGAcUUCCuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.