miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 75244 0.74 0.440014
Target:  5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3'
miRNA:   3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5'
18380 3' -54 NC_004681.1 + 72863 0.66 0.848187
Target:  5'- cCACgcgcGCGGCAACUUGAuccggguGGACAUUg -3'
miRNA:   3'- -GUGac--UGCCGUUGGACUu------CCUGUGGg -5'
18380 3' -54 NC_004681.1 + 69019 0.68 0.76446
Target:  5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3'
miRNA:   3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5'
18380 3' -54 NC_004681.1 + 67319 0.66 0.848187
Target:  5'- cCGCgggGGCGGUcucACCguccgcGAAGG-CGCCCa -3'
miRNA:   3'- -GUGa--CUGCCGu--UGGa-----CUUCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 67212 0.67 0.812777
Target:  5'- gGCUGuCGGCAACC------GCACCCg -3'
miRNA:   3'- gUGACuGCCGUUGGacuuccUGUGGG- -5'
18380 3' -54 NC_004681.1 + 66840 0.78 0.24234
Target:  5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3'
miRNA:   3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 66636 0.66 0.847342
Target:  5'- uCGCUcugGACGGCGcUCUGGgcaucggGGGGUACCCg -3'
miRNA:   3'- -GUGA---CUGCCGUuGGACU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 63094 0.68 0.748238
Target:  5'- uCGCUGGCGGUAugggugugguccucaGCCgucucAGuGGCACCCu -3'
miRNA:   3'- -GUGACUGCCGU---------------UGGacu--UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 62930 0.66 0.848187
Target:  5'- gGCUGGuCGGCAcgaaGCCggugugGGuguGGuCACCCg -3'
miRNA:   3'- gUGACU-GCCGU----UGGa-----CUu--CCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 62045 0.66 0.856511
Target:  5'- gCGCcggGACGaCAGCUUGggGG-CGCCg -3'
miRNA:   3'- -GUGa--CUGCcGUUGGACuuCCuGUGGg -5'
18380 3' -54 NC_004681.1 + 62014 0.68 0.77443
Target:  5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3'
miRNA:   3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 61896 0.82 0.146594
Target:  5'- cCACUGAUGGCGGCCUGAucGGCACg- -3'
miRNA:   3'- -GUGACUGCCGUUGGACUucCUGUGgg -5'
18380 3' -54 NC_004681.1 + 61526 0.76 0.326508
Target:  5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3'
miRNA:   3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5'
18380 3' -54 NC_004681.1 + 60608 0.7 0.658225
Target:  5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3'
miRNA:   3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 59853 0.67 0.803441
Target:  5'- cCACcu-CGGCGACUgccGGGACAUCCu -3'
miRNA:   3'- -GUGacuGCCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 57716 0.66 0.856511
Target:  5'- -cCUGACccGguGCCUGGccgGGGGCGCCg -3'
miRNA:   3'- guGACUGc-CguUGGACU---UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 56916 0.68 0.744135
Target:  5'- cCGC-GACGGgAGCCUG-GGGACcgGCCa -3'
miRNA:   3'- -GUGaCUGCCgUUGGACuUCCUG--UGGg -5'
18380 3' -54 NC_004681.1 + 55811 0.72 0.530455
Target:  5'- uGCUGACGGUcgauGACCUcAAGG-CGCUCg -3'
miRNA:   3'- gUGACUGCCG----UUGGAcUUCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 55403 0.68 0.754358
Target:  5'- uGCUgucGAUGGUcgcGCCUGAGauGGACACCg -3'
miRNA:   3'- gUGA---CUGCCGu--UGGACUU--CCUGUGGg -5'
18380 3' -54 NC_004681.1 + 55163 0.7 0.626803
Target:  5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3'
miRNA:   3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.