Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 52973 | 0.66 | 0.856511 |
Target: 5'- gGCUGGCGGCAAgUUUGAcGGcUACuCCa -3' miRNA: 3'- gUGACUGCCGUU-GGACUuCCuGUG-GG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 52757 | 0.72 | 0.520031 |
Target: 5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3' miRNA: 3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 50295 | 0.67 | 0.830888 |
Target: 5'- cCACguccccGCGGcCGACgCUGAAcucauGGGCACCCc -3' miRNA: 3'- -GUGac----UGCC-GUUG-GACUU-----CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 49075 | 0.68 | 0.76446 |
Target: 5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3' miRNA: 3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 48759 | 0.69 | 0.712849 |
Target: 5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3' miRNA: 3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 48664 | 0.75 | 0.376087 |
Target: 5'- aCGCUGGCGGgAAcCCUGgcGGGCcagcuCCCa -3' miRNA: 3'- -GUGACUGCCgUU-GGACuuCCUGu----GGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 47877 | 0.66 | 0.864606 |
Target: 5'- uGCgGAC-GUGACUUGggGuGACAUCCg -3' miRNA: 3'- gUGaCUGcCGUUGGACuuC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 44647 | 0.66 | 0.856511 |
Target: 5'- aCACcGACuGCAccgugcagGCC--AAGGACACCCu -3' miRNA: 3'- -GUGaCUGcCGU--------UGGacUUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 41734 | 0.7 | 0.626803 |
Target: 5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3' miRNA: 3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39480 | 0.66 | 0.856511 |
Target: 5'- gCGCUGGCucaaggccgguGGCAGCgaGGcGGGACucaugGCCCa -3' miRNA: 3'- -GUGACUG-----------CCGUUGgaCU-UCCUG-----UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39355 | 0.68 | 0.76446 |
Target: 5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3' miRNA: 3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39019 | 0.68 | 0.774429 |
Target: 5'- cCACggcccGCGGCGACaaaGAGGACugCCu -3' miRNA: 3'- -GUGac---UGCCGUUGgacUUCCUGugGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 38836 | 0.78 | 0.261533 |
Target: 5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3' miRNA: 3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35935 | 0.67 | 0.803441 |
Target: 5'- gGCUGGCcGC-GCgCUGggGGucucCGCCCg -3' miRNA: 3'- gUGACUGcCGuUG-GACuuCCu---GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35781 | 0.72 | 0.518993 |
Target: 5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3' miRNA: 3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35456 | 0.66 | 0.848187 |
Target: 5'- aCGCUGGCGGUGccGCucuugCUGgcGGuguuCACCCu -3' miRNA: 3'- -GUGACUGCCGU--UG-----GACuuCCu---GUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 35055 | 0.66 | 0.864606 |
Target: 5'- cCGCgGACGGCAACCacagUGGcAGGcucgguGCGCUCc -3' miRNA: 3'- -GUGaCUGCCGUUGG----ACU-UCC------UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 34047 | 0.67 | 0.782304 |
Target: 5'- cCACUG-CGGCGcgaaggccgucgaACCUGGAGGcguGCAggagguuCCCg -3' miRNA: 3'- -GUGACuGCCGU-------------UGGACUUCC---UGU-------GGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32652 | 0.68 | 0.758413 |
Target: 5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3' miRNA: 3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 32168 | 0.66 | 0.864606 |
Target: 5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3' miRNA: 3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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